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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IEPINFMATMVRRVQLTDEDKSLLAEAAPWGKEIAPQMADTFYDYLGRDEEMNAILNATEGRIHRLHQTFVDWFYEMFTG
MDSWGKAYAERRWKIGLVHVRIGIGPQHVVPAMAVVVNAVRQKLREANKSEALSDALGKICMIDLAFIEQAYFEVSS

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8h17:A 157 157 1.0000 1.0000 1.0000 1.06e-117
2 2w31:A 152 144 0.2866 0.2961 0.3125 2.19e-14 2w31:B
3 5ohe:F 155 139 0.2803 0.2839 0.3165 1.23e-12 5ohe:A, 5ohe:B, 5ohe:C, 5ohe:D, 5ohe:E, 5ohe:G, 5ohe:H, 5ohf:A, 5ohf:B, 5ohf:C, 5ohf:D, 5ohf:E, 5ohf:F, 5ohf:G, 5ohf:H, 6otd:A
4 1or4:A 169 97 0.1783 0.1657 0.2887 4.15e-07 1or4:B, 1or6:A, 1or6:B
5 6f77:A 399 43 0.0955 0.0376 0.3488 3.1 6f77:C, 6f77:D, 6f77:E, 6f77:F
6 7t1w:H2 217 45 0.0764 0.0553 0.2667 4.0 7t1w:H, 7t1w:H3, 7t1w:H4, 7t1w:H5, 7t1x:H, 7t1x:H2, 7t1x:H3, 7t1x:H4, 7t1x:H5
7 6s6b:D 285 73 0.1146 0.0632 0.2466 7.0 6s6b:E, 6s6b:F, 6s6b:G, 6s8b:D, 6s8b:E, 6s8b:F, 6s8b:G, 6s8e:D, 6s8e:E, 6s8e:F, 6s8e:G, 6s91:D, 6s91:E, 6s91:F, 6s91:G, 6sh8:D, 6sh8:E, 6sh8:F, 6sh8:G, 6shb:D, 6shb:E, 6shb:F, 6shb:G, 6sic:D, 6sic:E, 6sic:F, 6sic:G
8 2jgd:A 812 29 0.0701 0.0135 0.3793 7.4 2jgd:B
9 6vef:A 844 29 0.0701 0.0130 0.3793 7.4 6vef:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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