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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
IENSAIALSGIVSVANNADNRLEVFGVSTDSAVWHNWQTAPLPNSSWAGWNKFNGVVTSKPAVHRNSDGRLEVFVRGTDN
ALWHNWQTAADTNTWSSWQPLYGGITSNPEVCLNSDGRLEVFVRGSDNALWHIWQTAAHTNSWSNWKSLGGTLTSNPAAH
LNADGRIEVFARGADNALWHIWQTAAHTDQWSNWQSLKSVITSDPVVINNCDGRLEVFARGADSTLRHISQIGSDSVSWS
NWQCLDGVITSAPAAVKNISGQLEVFARGADNTLWRTWQTSHNGPWSNWSSFTGIIASAPTVAKNSDGRIEVFVLGLDKA
LWHLWQTTSSTTSSWTTWALIGGITLIDASVIK

The query sequence (length=353) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b7c:A 354 352 0.9972 0.9944 1.0000 0.0 7b7f:A, 7bb4:A, 7bbc:A, 5c9l:A, 5c9p:A
2 6flu:A 347 352 0.6374 0.6484 0.6392 2.78e-151 6f5w:A, 6f5w:B, 6fhx:A, 6fhx:B, 6fhy:A, 6fhy:B, 6flu:B, 5mxf:A, 5mxg:A, 5mxh:A, 6rgj:A, 6rgr:A, 6rgu:A, 6rgw:A
3 6flu:A 347 54 0.0623 0.0634 0.4074 3.48e-04 6f5w:A, 6f5w:B, 6fhx:A, 6fhx:B, 6fhy:A, 6fhy:B, 6flu:B, 5mxf:A, 5mxg:A, 5mxh:A, 6rgj:A, 6rgr:A, 6rgu:A, 6rgw:A
4 6rg2:B 343 349 0.6317 0.6501 0.6390 1.31e-150 6rfz:A, 6rg1:A, 6rg2:A, 6rgg:A, 6rgg:B
5 3tvi:E 439 71 0.0425 0.0342 0.2113 0.29 3tvi:A, 3tvi:B, 3tvi:C, 3tvi:D, 3tvi:G, 3tvi:H, 3tvi:I, 3tvi:L
6 7cm7:A 620 91 0.0737 0.0419 0.2857 0.42 7cm6:A, 7cm6:B, 7cm6:C, 7cm6:D, 7cm6:E, 7cm6:F, 7cm6:G, 7cm6:H, 7cm7:B, 7cm7:C, 7cm7:D, 7cm7:E, 7cm7:F, 7cm7:G, 7cm7:H
7 7anw:A 645 73 0.0623 0.0341 0.3014 0.49 7anw:B, 7anw:C, 7anw:D, 7anw:E, 7anw:F, 7anw:G, 7anw:H, 8d0c:A, 8d0c:B, 8d0d:A, 8d0d:B, 8d0e:A, 8d0e:B, 8d0f:A, 8d0f:B, 8d0g:A, 8d0g:B, 8d0h:A, 8d0h:B, 8d0i:A, 8d0i:B, 7djt:A, 7djt:B, 7djt:C, 7djt:D, 7djt:E, 7djt:F, 7djt:G, 7djt:H, 8gni:A, 8gnj:A, 7nag:A, 7nag:B, 7nah:A, 7nah:B, 7nai:A, 7nai:B, 7naj:A, 7naj:B, 7nak:D, 7nak:C, 7nak:H, 7nak:G, 7nak:B, 7nak:A, 7nak:E, 7nak:F, 7nal:A, 7nal:B, 7nal:C, 7nal:D, 7nal:E, 7nal:F, 7nal:G, 7nal:H, 6o0q:A, 6o0q:B, 8p2l:A, 8p2l:B, 8p2l:C, 8p2l:D, 8p2l:E, 8p2l:F, 8p2l:G, 8p2l:H, 6zfx:A, 6zfx:B, 6zfx:C, 6zfx:D, 6zfx:E, 6zfx:F, 6zfx:G, 6zfx:H
8 7aih:Am 330 154 0.1076 0.1152 0.2468 1.8 7am2:Am, 7ane:Am
9 7d7p:A 329 74 0.0623 0.0669 0.2973 8.5 5vyd:A, 5vyd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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