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BioLiP
>protein
IEDKIEEILSKIYHIENEIARIKKLIGEARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1fav:A 78 78 1.0000 1.0000 1.0000 4.87e-49 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
2 6x5b:B 149 51 0.5769 0.3020 0.8824 1.71e-25 6x5b:E, 6x5b:K, 6x5c:B, 6x5c:G, 6x5c:F
3 6pwu:A 615 51 0.5641 0.0715 0.8627 1.81e-24 6j5e:I, 6ulc:C, 6ulc:A, 3vtp:C, 5yb2:E, 5yb2:F, 5yb2:D, 5yb2:A, 5yb2:B, 5yb2:C, 5yb2:M, 5yb3:E, 5yb3:F, 5yb3:D, 5yc0:A, 5yc0:D, 5yc0:E, 5z0w:E, 5zcx:A, 5zpw:A, 5zpw:E, 5zpw:C
4 7n6u:B 595 51 0.5769 0.0756 0.8824 3.73e-24 5fuu:A, 5fuu:D, 5fuu:E, 5fuu:F, 6j5e:K, 7n6u:C, 7n6u:A, 7n6w:A, 7n6w:B, 7n6w:C, 6olp:C, 7ska:B, 7ska:O, 7ska:Z, 6vpx:C, 5y14:C, 5y14:A, 5y14:B, 5yc0:B, 5yc0:C, 5yc0:F
5 2kp8:A 72 49 0.5641 0.6111 0.8980 1.04e-23 2kp8:B
6 7ucf:B 137 51 0.4615 0.2628 0.7059 2.84e-16 5t3x:B, 7t75:B, 7t9a:D, 7t9b:D, 7t9b:F
7 1czq:A 45 69 0.4744 0.8222 0.5362 3.16e-11 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
8 1ysa:C 57 28 0.2564 0.3509 0.7143 2.69e-10 1dgc:A, 2dgc:A, 1ysa:D
9 1uo4:B 31 28 0.3077 0.7742 0.8571 3.72e-10 1uo5:A
10 6opn:B 124 51 0.3718 0.2339 0.5686 1.37e-09 6opn:E, 6opn:H
11 1llm:C 87 28 0.2564 0.2299 0.7143 1.57e-09 1llm:D
12 5apw:B 64 55 0.2949 0.3594 0.4182 4.19e-09
13 5apw:B 64 26 0.2308 0.2812 0.6923 9.90e-09
14 2bni:C 34 28 0.2821 0.6471 0.7857 1.90e-08 2bni:D, 1u9h:A
15 1uny:B 30 26 0.2692 0.7000 0.8077 3.13e-08
16 6ohy:B 120 23 0.2564 0.1667 0.8696 4.59e-08 6ohy:E, 6ohy:F
17 3i5c:B 198 26 0.2308 0.0909 0.6923 1.58e-07 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
18 3crp:B 34 28 0.2179 0.5000 0.6071 2.28e-07 2b1f:A, 2b1f:C, 3crp:C
19 2r2v:C 33 28 0.2051 0.4848 0.5714 1.10e-06 2r2v:D
20 4hjb:C 30 27 0.2436 0.6333 0.7037 8.57e-05 4hjb:D
21 3w8v:A 32 28 0.1538 0.3750 0.4286 0.029 3w8v:B, 3w92:A, 3w92:B, 3w92:C, 3w93:A, 3w93:B, 3w93:C
22 6iry:A 468 20 0.1410 0.0235 0.5500 1.9 6irz:A, 6is0:A
23 6irw:A 494 24 0.1538 0.0243 0.5000 5.1 6irw:B
24 5zwb:A 271 29 0.1410 0.0406 0.3793 6.4 5zw9:A, 5zwa:A, 5zwa:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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