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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IDYSKLSKEVAYALRHAPWEYGLELDAEGWVDINQLLSSLHESEKWKKVSEHDLHVMIEKSDKKRYEISNGKIRALYGHS
IPQRIIKEQKCPPEVLYHGTARRFVKSIKEKGLQPQGRQYVHLSADVETALQVGKRRDIKPVLLIVNALEAWSEGIKFYL
GNDKVWLADAIPSKYIRF

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6e3a:A 180 178 0.9944 0.9833 0.9944 7.60e-130 6ede:A
2 8tfx:A 177 172 0.4045 0.4068 0.4186 6.41e-39 8tfy:A, 8tfz:A, 8tfz:B, 8tg5:A, 8tkb:A
3 7kw9:A 178 175 0.3933 0.3933 0.4000 2.94e-37
4 8tg3:A 187 172 0.3315 0.3155 0.3430 7.05e-27 8tg4:A
5 7yw2:A 206 179 0.2921 0.2524 0.2905 5.19e-17
6 7yw3:A 205 175 0.2809 0.2439 0.2857 1.29e-16
7 7yw4:A 120 93 0.1461 0.2167 0.2796 0.006
8 6ke6:RP 2052 46 0.0899 0.0078 0.3478 2.8
9 7suk:SP 2234 46 0.0899 0.0072 0.3478 3.1 6zqb:UT
10 7aju:UT 2313 46 0.0899 0.0069 0.3478 3.1 7ajt:UT, 6zqc:UT, 6zqd:UT, 6zqe:UT
11 6lqs:RP 2180 46 0.0899 0.0073 0.3478 3.4 7d63:RP, 6lqp:RP, 6lqq:RP, 6lqr:RP, 6lqt:RP, 6lqu:RP, 6lqv:RP
12 8wm6:g 219 35 0.0618 0.0502 0.3143 6.0 8wmv:g, 8wmw:g
13 5ue8:A 847 70 0.1124 0.0236 0.2857 6.1 5ue8:B, 1y8f:A
14 4qrn:A 352 41 0.0787 0.0398 0.3415 6.6 4inf:A, 4inf:B, 4inf:C, 4inf:D, 4qrn:B, 4qrn:C, 4qrn:D, 4qs5:A, 4qs5:B, 4qs5:C, 4qs5:D, 4qs6:A, 4qs6:B, 4qtg:A, 4qtg:B
15 8unf:A 187 78 0.1292 0.1230 0.2949 7.1 3u5z:A, 3u5z:K, 3u60:A, 8uh7:A, 8uk9:A, 8uk9:Q
16 3i0o:A 329 36 0.0618 0.0334 0.3056 9.7 3i0q:A, 3q2m:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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