Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IDWKQLRDKATQVAAGAYAPYSRFPVGAAALVDDGRVVTGCNVENVSYGLALCAECGVVCALHATGGGRLVALACVDGRG
APLMPCGRCRQLLFEHGGPELLVDHLAGPRRLGDLLPEP

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4f3w:B 121 119 1.0000 0.9835 1.0000 1.40e-82 4f3w:A, 4f3w:C, 4f3w:D
2 4wig:A 126 118 0.7899 0.7460 0.7966 1.99e-65 3ijf:X, 4wif:A, 4wif:B, 4wig:B
3 3mpz:A 125 118 0.7311 0.6960 0.7373 1.50e-58 3mpz:B, 3mpz:C, 3mpz:D
4 6kw6:A 119 118 0.6975 0.6975 0.7034 6.69e-54 6kw6:B
5 3r2n:D 122 118 0.6050 0.5902 0.6102 1.20e-50 3r2n:A, 3r2n:B, 3r2n:C
6 2d30:A 124 122 0.4202 0.4032 0.4098 1.41e-23 2d30:B
7 3dmo:A 133 106 0.4034 0.3609 0.4528 3.27e-21 3dmo:B, 3dmo:C, 3dmo:D
8 1jtk:A 131 103 0.3193 0.2901 0.3689 4.10e-18 1jtk:B, 1uwz:A, 1uwz:B, 1ux0:A, 1ux0:B, 1ux1:A, 1ux1:B, 1ux1:C, 1ux1:D
9 2fr6:A 137 89 0.3193 0.2774 0.4270 9.23e-18 2fr5:A, 2fr5:C, 2fr5:B, 2fr5:D, 2fr6:C, 2fr6:B, 2fr6:D, 1zab:A, 1zab:C, 1zab:B, 1zab:D
10 1mq0:A 130 95 0.3193 0.2923 0.4000 7.37e-17 1mq0:B
11 7zob:E 136 97 0.3277 0.2868 0.4021 7.78e-16 7zob:A, 7zob:B, 7zob:C, 7zob:D, 7zob:F, 7zob:G, 7zob:H
12 1r5t:A 141 122 0.3529 0.2979 0.3443 2.07e-12 1r5t:B, 1r5t:C, 1r5t:D
13 3oj6:A 134 121 0.4034 0.3582 0.3967 5.72e-10 3oj6:B, 3oj6:C, 3oj6:D
14 2z3i:A 129 101 0.3193 0.2946 0.3762 4.56e-07 1wn5:A, 1wn5:B, 1wn5:C, 1wn5:D, 1wn6:A, 1wn6:B, 2z3g:A, 2z3g:B, 2z3g:C, 2z3g:D, 2z3h:A, 2z3h:B, 2z3h:C, 2z3h:D, 2z3i:B, 2z3i:C, 2z3i:D, 2z3j:A, 2z3j:B, 2z3j:C, 2z3j:D
15 4eg2:A 297 110 0.3025 0.1212 0.3273 3.85e-04 4eg2:B, 4eg2:C, 4eg2:D, 4eg2:E, 4eg2:F, 4eg2:G, 4eg2:H
16 6k63:A 294 47 0.1429 0.0578 0.3617 0.011 6k63:B, 6k63:C, 6k63:D
17 6k63:A 294 87 0.2185 0.0884 0.2989 1.5 6k63:B, 6k63:C, 6k63:D
18 1af2:A 294 102 0.2773 0.1122 0.3235 0.024 1aln:A, 1ctt:A, 1ctu:A
19 1af2:A 294 50 0.1345 0.0544 0.3200 0.027 1aln:A, 1ctt:A, 1ctu:A
20 4imp:A 520 43 0.1429 0.0327 0.3953 0.026 4imp:B, 4imp:C, 4imp:D
21 4ccr:D 191 84 0.2185 0.1361 0.3095 1.1
22 7xrl:D 554 45 0.1008 0.0217 0.2667 1.5 3auj:A, 3auj:L, 1dio:A, 1dio:L, 1eex:A, 1eex:L, 1egm:A, 1egm:L, 1egv:A, 1egv:L, 1iwb:A, 1iwb:L, 1uc4:A, 1uc4:L, 1uc5:A, 1uc5:L, 7xrk:A, 7xrk:D, 7xrl:A, 5yrt:A, 5yrt:D, 5yrt:G, 5yrt:J, 5yrv:A, 5yrv:D, 5yrv:G, 5yrv:J, 5ysh:A, 5ysh:D, 5ysh:G, 5ysh:J
23 3iiv:B 262 21 0.0924 0.0420 0.5238 2.1 7ac8:A, 7ac8:C, 7ac8:E, 6ct3:A, 5d2t:A, 5d2w:A, 6dc1:A, 6dc1:B, 6dc1:H, 6dc1:K, 6dkv:A, 6dnj:A, 1gpw:C, 1gpw:E, 6rtz:A, 6ru0:A, 6ru0:C, 6ru0:E, 2wjz:A, 2wjz:C
24 1iyb:A 208 39 0.1092 0.0625 0.3333 2.5 1iyb:B
25 6ueb:A 2099 34 0.1176 0.0067 0.4118 3.1
26 3hxu:A 441 54 0.1345 0.0363 0.2963 4.0 3hxv:A, 3hxw:A, 3hxx:A, 3hxy:A, 3hxz:A, 3hxz:B, 3hxz:C, 3hxz:D, 3hy0:A, 3hy0:B, 3hy1:A
27 7qc8:A 250 19 0.1008 0.0480 0.6316 5.0 4ewn:D, 2wjz:E, 3zr4:E
28 7r3a:A 411 32 0.1092 0.0316 0.4062 5.6 7r3a:B, 7r3a:C, 7r3a:D, 7r3a:E, 7r3a:F, 7r3a:G, 7r3a:H
29 3st1:A 212 71 0.1849 0.1038 0.3099 7.5
30 8iav:A 451 35 0.1429 0.0377 0.4857 8.3 8iav:B
31 5mj7:A 322 67 0.1765 0.0652 0.3134 8.7 5mj7:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218