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BioLiP
>protein
IDVEKLLELLIKAAAAEFTTYYYYTILRNHATGLEGEAIKEIIEDARLEDRNHFEALVPRIYELGGELPRDIREFADLAS
CRDAYLPEEPTIENILKVLLEAERCAVGVYTEICNYTFGKDPRTYDLALAILHEEIEHEAWFEELLTGKPSGHFRRGKPG
ESPYVSKFLK

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7stw:A 170 170 1.0000 1.0000 1.0000 1.07e-122 7stw:B, 7stw:C, 7stw:D, 7stw:E, 7stw:F, 7stw:G, 7stw:H, 7stw:I, 7stw:J, 7stw:K, 7stw:L
2 2clb:A 169 154 0.6176 0.6213 0.6818 9.75e-74 2clb:B, 2clb:C, 2clb:D, 2clb:M, 2clb:N, 2clb:O, 2clb:P
3 2vzb:A 168 150 0.2941 0.2976 0.3333 3.24e-11 2vzb:B, 2vzb:C, 2vzb:D
4 8w1e:B 172 149 0.2882 0.2849 0.3289 9.37e-08 8w1d:A, 8w1e:A, 8w1e:C, 8w1e:D, 8w1e:E, 8w1e:F, 8w1e:G, 8w1e:H, 8w1e:I, 8w1e:J, 8w1e:K, 8w1e:L, 8w1f:A, 8w1f:B, 8w1f:C, 8w1f:D, 8w1f:E, 8w1f:F, 8w1f:G, 8w1f:H, 8w1f:I, 8w1f:J, 8w1f:K, 8w1f:L
5 7z1m:O 570 51 0.1059 0.0316 0.3529 0.83 8bws:O, 6cnc:O, 6cnd:O, 6eu0:O, 6eu1:O, 6f44:O, 7z2z:O
6 2fjc:B 156 50 0.0706 0.0769 0.2400 2.5 2fjc:A, 2fjc:D, 2fjc:C, 2fjc:E, 2fjc:H, 2fjc:F, 2fjc:G, 2fjc:I, 2fjc:L, 2fjc:J, 2fjc:K, 2fjc:M, 2fjc:N, 2fjc:O, 2fjc:P
7 3tlx:D 182 51 0.1059 0.0989 0.3529 2.7
8 1yj0:A 317 20 0.0647 0.0347 0.5500 2.8 1ala:A, 1yii:A
9 7aor:ad 801 90 0.1529 0.0325 0.2889 2.9
10 8p6i:H 210 29 0.0706 0.0571 0.4138 4.3 8p6i:h
11 3o0n:A 607 76 0.1059 0.0297 0.2368 5.2 1xjm:B
12 1xje:A 627 76 0.1059 0.0287 0.2368 5.4 3o0n:B, 3o0o:A, 3o0o:B, 3o0q:A, 3o0q:B, 1xje:B, 1xjf:A, 1xjf:B, 1xjg:A, 1xjg:B, 1xjj:A, 1xjj:B, 1xjk:A, 1xjk:B, 1xjm:A, 1xjn:A, 1xjn:B, 1xjn:C, 1xjn:D
13 7m2w:A 453 39 0.0765 0.0287 0.3333 9.1 7m2w:B, 7m2w:C, 7m2w:D, 7m2x:A, 7m2x:B, 7m2y:A, 7m2y:B, 7m2z:B, 7m2z:A, 8qv2:a, 8qv2:b, 8qv2:c, 8qv2:d, 8qv2:e, 8qv2:f, 8qv2:g, 8qv2:h, 8qv2:i, 8qv2:j, 8qv2:k, 8qv2:l, 8qv2:m, 8qv2:n, 8qv3:c, 8qv3:d

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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