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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERAR
LAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLA
ELVAAYGEVKAQAFEQLKQSYDVIINSTSPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAE
SFMLWRGLRPGTKQILRELRKNLE

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3pgj:A 272 271 1.0000 0.9706 0.9742 0.0 3pgj:B, 3pgj:C, 3pgj:D, 3sef:A, 3sef:B
2 3sef:C 244 264 0.9242 1.0000 0.9242 6.63e-175
3 1nyt:A 271 271 0.5152 0.5018 0.5018 1.31e-87 1nyt:B, 1nyt:C, 1nyt:D
4 1p77:A 265 265 0.4697 0.4679 0.4679 3.85e-78
5 3doo:A 258 251 0.3258 0.3333 0.3426 8.48e-38
6 2hk9:A 269 252 0.3295 0.3234 0.3452 5.07e-32 2hk9:B, 2hk9:C, 2hk9:D
7 1nvt:A 287 264 0.3409 0.3136 0.3409 4.89e-27 1nvt:B
8 1npd:B 288 261 0.3182 0.2917 0.3218 3.84e-26 1npd:A, 1o9b:A, 1o9b:B, 3t4e:A, 3t4e:B, 1vi2:A, 1vi2:B
9 3toz:A 291 261 0.2841 0.2577 0.2874 3.09e-24 3tnl:A, 3tnl:B, 3tnl:C, 3tnl:D, 3toz:B, 3toz:C, 3toz:D, 3toz:E, 3toz:F, 3toz:G, 3toz:H
10 4fos:A 263 255 0.3068 0.3080 0.3176 3.24e-23 4fq8:A, 4fq8:B, 4fr5:A, 4fr5:B, 4fsh:A, 3phh:A, 3phi:A, 3phi:B, 3phj:A, 3phj:B
11 2ev9:B 263 269 0.2955 0.2966 0.2900 1.56e-22 2cy0:A, 2d5c:A, 2d5c:B, 2ev9:A
12 2o7q:A 501 278 0.2992 0.1577 0.2842 1.77e-18 6bmb:A, 6bmq:A, 2gpt:A, 2o7s:A
13 6hqv:A 1555 277 0.2803 0.0476 0.2671 1.88e-17 6hqv:B
14 7col:A 280 224 0.2765 0.2607 0.3259 7.86e-17 7col:B
15 4k28:A 266 244 0.2576 0.2556 0.2787 1.64e-16 4k28:B
16 7tbv:A 682 281 0.2955 0.1144 0.2776 8.01e-14 7tbv:B, 7tbv:C, 7tbv:D
17 4p4g:A 265 163 0.2045 0.2038 0.3313 8.91e-10 4p4l:A, 4p4l:B, 4p4l:C
18 3jyo:A 282 219 0.2235 0.2092 0.2694 1.07e-08 3jyp:A, 3jyq:A
19 1gpj:A 399 89 0.1098 0.0727 0.3258 0.002
20 3pef:A 287 69 0.0720 0.0662 0.2754 0.57 3pef:B, 3pef:C, 3pef:D, 3pef:E, 3pef:F, 3pef:G, 3pef:H
21 8a3x:A 295 160 0.1591 0.1424 0.2625 1.2 8a3x:B, 8a3x:C, 8a3x:D, 8a5z:A, 8a5z:B
22 2h4z:A 255 86 0.1023 0.1059 0.3140 1.7 2f90:A, 2f90:B, 2h4z:B, 2hhj:A, 2hhj:B, 7n3r:B, 7n3s:A, 7n3s:B, 7thi:A, 7thi:B
23 5iys:A 283 41 0.0530 0.0495 0.3415 7.4
24 6rm3:LF0 230 62 0.0682 0.0783 0.2903 7.5
25 2i9p:B 296 99 0.1098 0.0980 0.2929 9.8 2i9p:A, 2i9p:C, 2i9p:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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