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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IDPRFPHHHPRPQSFWEARAKALESLLIEKGHLSSDASERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETVLR
ELGYYGLQGEHIRVVENTDTVHNVVVCTLCSCYPWPLLGLPPSWYKEPAYRARVVKEPRQVLKEFGLDLPDSVEIRVWDS
SSEIRFMVLPQRPEGTEGMTEEELAKLVTRDSMIGVAKIEPP

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1v29:A 203 201 0.9257 0.9212 0.9303 8.58e-132 2dpp:A, 3hht:A, 7qom:A, 7qop:A, 7qou:A, 7qov:A, 7qoy:A, 7z0v:A
2 4ob3:A 204 180 0.6040 0.5980 0.6778 9.03e-86 9d6k:A, 8i6n:A, 1ire:A, 4ob0:A, 4ob1:A, 4ob2:A, 1ugp:A, 1ugr:A, 1ugs:A, 3vyh:A, 7w8l:A, 7w8m:A
3 3qxe:A 201 194 0.5842 0.5871 0.6082 2.10e-83 3qxe:C, 3qxe:E, 3qxe:G, 3qyg:A, 3qyg:C, 3qyg:E, 3qyg:G, 3qyh:A, 3qyh:C, 3qyh:E, 3qyh:G, 3qz5:A, 3qz5:C, 3qz5:E, 3qz5:G, 3qz9:A, 3qz9:C, 3qz9:E, 3qz9:G
4 1ahj:A 198 179 0.4653 0.4747 0.5251 3.21e-65 3a8g:A, 3a8h:A, 3a8l:A, 3a8m:A, 3a8o:A, 1ahj:C, 1ahj:E, 1ahj:G, 2ahj:A, 2ahj:C, 2cyz:A, 2cz0:A, 2cz1:A, 2cz6:A, 2cz7:A, 2d0q:A, 2qdy:A, 3wvd:A, 3wve:A, 3x20:A, 3x24:A, 3x25:A, 3x26:A, 3x28:A, 2zcf:A, 2zpb:A, 2zpe:A, 2zpf:A, 2zpg:A, 2zph:A, 2zpi:A
5 4fm4:A 206 189 0.4406 0.4320 0.4709 1.94e-58 4fm4:C, 4fm4:E, 4fm4:G, 4fm4:I, 4fm4:K, 4fm4:M, 4fm4:O, 4zgd:A, 4zgd:C, 4zgd:E, 4zgd:G, 4zgd:I, 4zgd:K, 4zgd:M, 4zgd:O, 4zge:A, 4zge:C, 4zge:E, 4zge:G, 4zge:I, 4zge:K, 4zge:M, 4zge:O, 4zgj:A, 4zgj:C, 4zgj:E, 4zgj:G, 4zgj:I, 4zgj:K, 4zgj:M, 4zgj:O
6 2zzd:F 218 199 0.4653 0.4312 0.4724 6.31e-57 2dd5:C, 2dd5:F, 2dd5:I, 2dd5:L, 2dxb:C, 2dxb:F, 2dxb:I, 2dxb:L, 2dxb:O, 2dxb:R, 2dxb:U, 2dxb:X, 2dxc:C, 2dxc:F, 2dxc:I, 2dxc:L, 3vyg:C, 3vyg:F, 3vyg:I, 3vyg:L, 2zzd:C, 2zzd:I, 2zzd:L
7 8bpx:AD 196 106 0.1535 0.1582 0.2925 0.47 8bel:D, 8bel:N, 8bpx:BD, 8bq5:AD, 8bq5:BD, 8bq6:AD, 8bq6:BD
8 8ojl:A 777 50 0.0990 0.0257 0.4000 1.8 9cc0:A, 9cc0:C, 9cc0:E, 9cc0:B, 9cc0:D, 9cc0:F, 9cc3:B, 9cc3:C, 9cc3:D, 9cc3:E, 7krz:A, 7krz:C, 7krz:B, 7krz:D, 7krz:E, 7krz:F, 7ksl:B, 7ksl:A, 7ksl:F, 7ksm:B, 7ksm:A, 7ksm:C, 7ksm:D, 7ksm:E, 7ksm:F, 7nfy:A, 7nfy:B, 7nfy:C, 7nfy:E, 7nfy:D, 7nfy:F, 7ng4:B, 7ng4:C, 7ng4:D, 7ng4:A, 7ng4:E, 7ng4:F, 7ng5:A, 7ng5:D, 7ng5:B, 7ng5:C, 7ng5:E, 7ng5:F, 7ngc:A, 7ngc:B, 7ngc:C, 7ngc:D, 7ngc:E, 7ngc:F, 7ngf:A, 7ngf:F, 7ngf:B, 7ngf:C, 7ngf:D, 7ngf:E, 7ngl:A, 7ngl:B, 7ngl:C, 7ngl:D, 7ngl:E, 7ngl:F, 7ngp:A, 7ngp:B, 7ngp:C, 7ngp:D, 7ngp:E, 7ngp:F, 7ngq:A, 7ngq:B, 7ngq:C, 7ngq:D, 7ngq:E, 7ngq:F, 8ojl:B, 8ojl:C, 8ojl:D, 8ojl:E, 8ojl:F, 8oka:A, 8oka:B, 8oka:C, 8oka:D, 8oka:E, 8oka:F, 8om7:A, 8om7:B, 8om7:C, 8om7:D, 8om7:E, 8om7:F, 8ovf:A, 8ovf:B, 8ovf:C, 8ovf:D, 8ovf:E, 8ovf:F, 7oxo:A, 7oxo:B, 7oxo:C, 7oxo:D, 7oxo:E, 7oxo:F, 7p09:A, 7p09:B, 7p09:D, 7p09:C, 7p09:E, 7p0b:A, 7p0b:B, 7p0b:C, 7p0b:D, 7p0b:E, 7p0b:F, 7p0m:A, 7p0m:B, 7p0m:C, 7p0m:D, 7p0m:E, 6wzv:A, 6wzv:B, 6x1m:A, 6x1m:B, 6x27:A, 6x27:B, 6x27:C, 6x27:D, 6x27:E, 6x27:F, 6x27:G, 6x27:H, 6x27:I, 6x27:J, 6x27:K, 6x27:L
9 7p09:F 520 50 0.0990 0.0385 0.4000 1.8 7ksl:C, 7ksl:E, 7p0m:F
10 7mqa:LO 819 48 0.0594 0.0147 0.2500 2.1
11 7mq8:LO 848 48 0.0594 0.0142 0.2500 2.2 7mq9:LO
12 1i94:R 82 71 0.0990 0.2439 0.2817 4.9 5a9z:BV, 5aa0:BV, 4aqy:R, 7azo:S18A, 7azo:S18B, 7azs:S18A, 7azs:S18B, 9b00:1r, 9b00:2r, 4b3m:R, 4b3r:R, 4b3s:R, 4b3t:R, 6b4v:AB, 6b4v:ED, 6boh:BB, 6boh:GD, 6bok:ZA, 6bok:CD, 5br8:R, 6buw:QR, 6buw:XR, 6bz6:QR, 6bz6:XR, 6bz7:QR, 6bz7:XR, 6bz8:QR, 6bz8:XR, 6c5l:AR, 6c5l:CR, 6cae:1r, 6cae:2r, 6cao:R, 6cap:R, 6caq:R, 6car:R, 6cas:R, 6cfj:1r, 6cfj:2r, 6cfk:1r, 6cfk:2r, 6cfl:1r, 6cfl:2r, 8cvj:1r, 8cvj:2r, 8cvk:1r, 8cvk:2r, 8cvl:1r, 8cvl:2r, 5czp:XR, 5czp:QR, 6czr:1r, 6czr:2r, 5d8b:SA, 5d8b:OC, 5dfe:XR, 5dfe:QR, 5dox:1r, 5dox:2r, 5doy:1r, 5doy:2r, 4dr1:R, 4dr2:R, 4dr3:R, 4dr4:R, 4dr5:R, 4dr6:R, 4dr7:R, 6dti:R, 4duy:R, 4duz:R, 7dug:R, 7duh:R, 7dui:R, 7duj:R, 7duk:R, 7dul:R, 4dv0:R, 4dv1:R, 4dv2:R, 4dv3:R, 4dv4:R, 4dv5:R, 4dv6:R, 4dv7:R, 2e5l:R, 5e7k:9I, 5e7k:9A, 5e81:9I, 5e81:9A, 8ekb:1r, 8ekb:2r, 5el4:9I, 5el4:9A, 5el5:9I, 5el5:9A, 5el6:9I, 5el6:9A, 5el7:9I, 5el7:9A, 8ev6:1r, 8ev6:2r, 8ev7:1r, 8ev7:2r, 2f4v:R, 5f8k:1r, 5f8k:2r, 8fc1:1r, 8fc1:2r, 8fc2:1r, 8fc2:2r, 8fc3:1r, 8fc3:2r, 8fc4:1r, 8fc4:2r, 8fc5:1r, 8fc5:2r, 8fc6:1r, 8fc6:2r, 5fdu:1r, 5fdu:2r, 5fdv:1r, 5fdv:2r, 1fjg:R, 6fkr:1r, 6fkr:2r, 8fom:QR, 8fom:XR, 8fon:QR, 8fon:XR, 1g1x:H, 8g29:1r, 8g29:2r, 8g2a:1r, 8g2a:2r, 8g2b:1r, 8g2b:2r, 8g2c:1r, 8g2c:2r, 8g2d:1r, 8g2d:2r, 4gkj:R, 4gkk:R, 6gsj:9I, 6gsj:9A, 6gsk:9I, 6gsk:9A, 6gsl:9I, 6gsl:9A, 6gzq:R2, 6gzx:R3, 6gzx:R4, 6gzz:R3, 6gzz:R4, 5hau:1r, 5hau:2r, 5hcp:1r, 5hcp:2r, 5hcq:1r, 5hcq:2r, 5hcr:1r, 5hcr:2r, 5hd1:1r, 5hd1:2r, 2hhh:R, 1hnw:R, 1hnx:R, 1hnz:R, 1hr0:R, 1i97:R, 1ibk:R, 1ibl:R, 1ibm:R, 5ib7:9I, 5ib7:9A, 5ib8:9I, 5ib8:9A, 5ibb:9I, 5ibb:9A, 5imq:V, 5imr:V, 5iwa:R, 5j30:QR, 5j30:XR, 5j3c:QR, 5j3c:XR, 5j4b:1r, 5j4b:2r, 5j4c:1r, 5j4c:2r, 5j4d:AB, 5j4d:FD, 1j5e:R, 5j8b:r, 4ji0:R, 4ji1:R, 4ji2:R, 4ji3:R, 4ji4:R, 4ji5:R, 4ji6:R, 4ji7:R, 4ji8:R, 7jql:1r, 7jql:2r, 7jqm:1r, 7jqm:2r, 4jv5:R, 4jya:R, 4k0k:R, 4khp:R, 4kvb:R, 4l47:QR, 4l47:XR, 4l71:QR, 4l71:XR, 4lel:QR, 4lel:XR, 4lf4:R, 4lf5:R, 4lf6:R, 4lf7:R, 4lf8:R, 4lf9:R, 4lfa:R, 4lfb:R, 4lfc:R, 4lfz:QR, 4lfz:XR, 7lh5:AR, 7lh5:CR, 5lmn:R, 5lmo:R, 5lmp:R, 5lmq:R, 5lmr:R, 5lms:R, 5lmt:R, 5lmu:R, 5lmv:R, 4lnt:QR, 4lnt:XR, 4lsk:QR, 4lsk:XR, 4lt8:QR, 4lt8:XR, 7md7:1r, 7md7:2r, 6mkn:R, 6mpf:R, 6mpi:R, 6n1d:AS18, 6n1d:BS18, 1n32:R, 1n33:R, 1n34:R, 1n36:R, 6n9e:1r, 6n9e:2r, 6n9f:1r, 6n9f:2r, 5ndj:9I, 5ndj:9A, 5ndk:9I, 5ndk:9A, 6nd5:1r, 6nd5:2r, 6nd6:1r, 6nd6:2r, 6ndk:QR, 6ndk:XR, 6nsh:QR, 6nsh:XR, 6nta:QR, 6nta:XR, 6nuo:QR, 6nuo:XR, 6nwy:QR, 6nwy:XR, 4nxm:R, 4nxn:R, 6ny6:R, 6o3m:QR, 6o3m:XR, 6o97:1r, 6o97:2r, 6of1:1r, 6of1:2r, 6of6:QR, 6of6:XR, 6oj2:QR, 6oj2:XR, 6ope:QR, 6ope:XR, 6ord:QR, 6ord:XR, 6osi:QR, 6osi:XR, 3oto:R, 5ot7:Q, 6otr:QR, 6otr:XR, 4ox9:R, 6oxa:QR, 6oxa:XR, 6oxi:QR, 6oxi:XR, 4p6f:QR, 4p6f:XR, 4p70:QR, 4p70:XR, 6q95:w, 6qnq:9I, 6qnq:9A, 6qnr:9I, 6qnr:9A, 7rq8:1r, 7rq8:2r, 7rq9:1r, 7rq9:2r, 7rqa:1r, 7rqa:2r, 7rqb:1r, 7rqb:2r, 7rqc:1r, 7rqc:2r, 7rqd:1r, 7rqd:2r, 7rqe:1r, 7rqe:2r, 3t1h:R, 3t1y:R, 8t8b:1r, 8t8b:2r, 8t8c:1r, 8t8c:2r, 4tua:QR, 4tua:XR, 4tub:QR, 4tub:XR, 4tuc:QR, 4tuc:XR, 4tud:QR, 4tud:XR, 4tue:QR, 4tue:XR, 7u2h:1r, 7u2h:2r, 7u2i:1r, 7u2i:2r, 7u2j:1r, 7u2j:2r, 6ucq:1r, 6ucq:2r, 8ud6:1r, 8ud6:2r, 8ud7:1r, 8ud7:2r, 8ud8:1r, 8ud8:2r, 6uo1:1r, 6uo1:2r, 5uq7:r, 5uq8:r, 2uu9:R, 2uua:R, 2uub:R, 2uuc:R, 8uvr:1r, 8uvr:2r, 8uvs:1r, 8uvs:2r, 2uxb:R, 2uxc:R, 2uxd:R, 7v2l:R, 7v2m:R, 7v2n:R, 7v2o:R, 7v2p:R, 7v2q:R, 4v49:AR, 4v4a:AR, 4v4g:AR, 4v4g:CR, 4v4g:ER, 4v4g:GR, 4v4g:IR, 4v4i:s, 4v4j:s, 4v4p:BU, 4v4r:AR, 4v4s:AR, 4v4t:AR, 4v4x:AU, 4v4y:AU, 4v4z:AU, 4v51:AR, 4v51:CR, 4v5a:AR, 4v5a:CR, 4v5c:AR, 4v5c:CR, 4v5d:AR, 4v5d:CR, 4v5e:AR, 4v5e:CR, 4v5f:AR, 4v5f:CR, 4v5g:AR, 4v5g:CR, 4v5j:AR, 4v5j:CR, 4v5k:AR, 4v5k:CR, 4v5l:AR, 4v5m:AR, 4v5n:AR, 4v5p:AR, 4v5p:CR, 4v5q:AR, 4v5q:CR, 4v5r:AR, 4v5r:CR, 4v5s:AR, 4v5s:CR, 4v63:AR, 4v63:CR, 4v67:AR, 4v67:CR, 4v68:AR, 4v6a:AR, 4v6a:CR, 4v6f:BU, 4v6f:CU, 4v6g:AU, 4v6g:CU, 4v7j:Ar, 4v7j:Br, 4v7k:Ar, 4v7k:Br, 4v7l:AR, 4v7l:CR, 4v7m:AR, 4v7m:CR, 4v7p:AR, 4v7p:DR, 4v7w:AR, 4v7w:CR, 4v7x:AR, 4v7x:CR, 4v7y:AR, 4v7y:CR, 4v7z:AR, 4v7z:CR, 4v83:AR, 4v83:CR, 4v84:AR, 4v84:CR, 4v87:BU, 4v87:CU, 4v8a:CR, 4v8a:DR, 4v8b:AU, 4v8b:CU, 4v8c:CU, 4v8c:DU, 4v8d:AU, 4v8d:CU, 4v8e:BU, 4v8e:DU, 4v8f:BU, 4v8f:CU, 4v8g:AR, 4v8g:CR, 4v8h:AR, 4v8h:CR, 4v8i:AR, 4v8i:CR, 4v8j:AR, 4v8j:CR, 4v8n:AR, 4v8n:CR, 4v8o:AR, 4v8q:BR, 4v8u:AR, 4v8u:CR, 4v8x:AR, 4v8x:CR, 5v8i:1r, 5v8i:2r, 4v90:AR, 4v95:AR, 4v95:CR, 4v97:AR, 4v97:CR, 4v9a:AU, 4v9a:CU, 4v9b:AU, 4v9b:CU, 4v9h:AR, 4v9i:AR, 4v9i:CR, 4v9j:AR, 4v9j:CR, 4v9k:AR, 4v9k:CR, 4v9l:AR, 4v9l:CR, 4v9m:AR, 4v9m:CR, 4v9n:AR, 4v9n:CR, 4v9q:BR, 4v9q:DR, 4v9r:AR, 4v9r:CR, 4v9s:AR, 4v9s:CR, 5vp2:1r, 5vp2:2r, 5vpo:QR, 5vpo:XR, 5vpp:QR, 5vpp:XR, 2vqe:R, 2vqf:R, 8vtu:1r, 8vtu:2r, 8vtv:1r, 8vtv:2r, 8vtw:1r, 8vtw:2r, 8vtx:1r, 8vtx:2r, 8vty:1r, 8vty:2r, 1vvj:QR, 1vvj:XR, 1vy4:AR, 1vy4:CR, 1vy5:AR, 1vy5:CR, 1vy6:AR, 1vy6:CR, 1vy7:AR, 1vy7:CR, 4w29:AR, 4w29:CR, 4w2e:r, 4w2f:AR, 4w2f:CR, 4w2g:AR, 4w2g:CR, 4w2h:AR, 4w2h:CR, 4w2i:AR, 4w2i:CR, 4w4g:QR, 4w4g:XR, 5w4k:1r, 5w4k:2r, 5wis:1r, 5wis:2r, 5wit:1r, 5wit:2r, 5wnp:R, 5wnq:R, 5wnr:R, 5wns:R, 5wnt:R, 5wnu:R, 5wnv:R, 4wpo:BR, 4wpo:DR, 4wq1:9I, 4wq1:9A, 4wqf:BR, 4wqf:DR, 4wqr:9I, 4wqr:9A, 4wqu:BR, 4wqu:DR, 4wqy:BR, 4wqy:DR, 4wr6:9I, 4wr6:9A, 4wra:9I, 4wra:9A, 4wro:9I, 4wsd:9I, 4wsd:9A, 4wsm:9I, 4wsm:9A, 4wt1:9I, 4wt1:9A, 4wt8:AS, 4wt8:BS, 4wu1:9I, 4wu1:9A, 4wzd:9I, 4wzd:9A, 4wzo:9I, 4wzo:9A, 4x62:R, 4x64:R, 4x65:R, 4x66:R, 4xej:AS18, 4xej:BS18, 6xhv:1r, 6xhv:2r, 6xhw:1r, 6xhw:2r, 6xhx:1r, 6xhx:2r, 6xhy:1r, 6xhy:2r, 1xmo:R, 1xmq:R, 1xnq:R, 1xnr:R, 6xqd:1r, 6xqd:2r, 6xqe:1r, 6xqe:2r, 4y4o:1r, 4y4o:2r, 4y4p:1r, 4y4p:2r, 4yhh:R, 4ypb:QR, 4ypb:XR, 4yy3:R, 4yzv:QR, 4yzv:XR, 4z3s:1r, 4z3s:2r, 4z8c:1r, 4z8c:2r, 4zer:1r, 4zer:2r, 5zlu:B, 2zm6:R, 4zsn:QR, 4zsn:XR
13 2j6c:A 109 44 0.0743 0.1376 0.3409 6.8
14 5buv:A 174 76 0.1040 0.1207 0.2763 7.5 5buv:B
15 2pg0:A 380 63 0.0743 0.0395 0.2381 8.2 2pg0:B
16 3jd5:j 213 50 0.0842 0.0798 0.3400 8.8 6neq:j, 6nf8:j

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218