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BioLiP
>protein
IDPFTMSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEASAEVRAEIDHLLARQAAGEALSAGDLAP
LAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGLKPEGWRPADVRGVIERLQHA

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2yf3:C 153 149 0.9929 0.9150 0.9396 5.01e-95 5hva:A, 5hva:B, 5hva:C, 5hva:D, 5hwu:A, 5hwu:B, 5hx1:A, 5hx1:C, 5hx1:B, 5hx1:D, 5hyl:A, 5hyl:C, 5hyl:B, 5hyl:D, 5hzz:A, 5hzz:B, 5hzz:C, 5hzz:D, 5i0j:A, 5i0j:D, 5i0j:B, 5i0j:C, 5i0m:A, 5i0m:D, 5i0m:B, 5i0m:C, 2yf3:A, 2yf3:B, 2yf3:D, 2yf3:E, 2yf3:F, 2yfc:A, 2yfc:B, 2yfc:C, 2yfc:D, 2yfd:A, 2yfd:B, 2yfd:C, 2yfd:D
2 4df2:A 404 75 0.1702 0.0594 0.3200 4.3 4m5p:A, 4qai:A, 4qai:B, 4qai:C, 4qai:D, 4qai:E, 4qai:F, 3tjl:A, 3upw:A
3 2yxh:A 114 82 0.1631 0.2018 0.2805 4.6 2yxh:B
4 3tqo:A 387 51 0.1348 0.0491 0.3725 6.0
5 2ge3:A 164 40 0.0993 0.0854 0.3500 7.9 2ge3:B, 2ge3:C
6 8snd:A 500 33 0.0851 0.0240 0.3636 8.6 8snc:A, 8sne:A, 7sp6:A, 7sp7:A, 7sp8:A, 7sp9:A, 7spa:A
7 5fp1:A 701 62 0.1135 0.0228 0.2581 9.0
8 1cgm:E 160 48 0.1206 0.1062 0.3542 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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