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BioLiP
>protein
IDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGR

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2mkd:A 60 44 1.0000 0.7333 1.0000 2.05e-29 2mkn:A
2 1zu1:A 127 31 0.3409 0.1181 0.4839 1.13e-05
3 6g90:T 462 30 0.2500 0.0238 0.3667 0.13 7dco:u, 4dgw:A, 5nrl:T, 5zwm:u
4 8idf:A 459 24 0.2500 0.0240 0.4583 0.22
5 3j79:J 229 41 0.2955 0.0568 0.3171 2.3 3jbn:AJ, 3jbo:AJ, 3jbp:AJ, 8tpu:AJ, 5umd:J
6 7txc:E 84 17 0.1818 0.0952 0.4706 2.4
7 8qzs:r 114 27 0.1818 0.0702 0.2963 3.6 7abf:N, 7abg:N, 7abi:N, 8h6k:4N, 5o9z:N, 8q7n:r, 8qpe:r
8 8bcx:D 444 30 0.2273 0.0225 0.3333 5.8 8bcx:A, 8bcx:B, 8bcx:C
9 3vrd:A 174 21 0.1818 0.0460 0.3810 8.1
10 5k3i:A 661 39 0.3182 0.0212 0.3590 8.8 5k3i:B, 5k3i:C, 5k3i:D, 5k3i:E, 5k3i:F, 5k3i:G, 5k3i:H
11 3o2k:A 429 26 0.2045 0.0210 0.3462 9.8
12 8q1b:D 245 29 0.2500 0.0449 0.3793 9.9 8q1b:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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