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BioLiP
>protein
IDGMKLYLQHCKTCHGVDGNPTDLGEGLGARKFADAEWQAKTSDERIIEQINEGTPEMMMPFKEKLTPEEVKALVPVVRG
FKK

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mxy:A 83 83 1.0000 1.0000 1.0000 6.08e-59 5mxz:A
2 7o38:A 81 79 0.3614 0.3704 0.3797 1.19e-13
3 7vzg:c 145 73 0.3012 0.1724 0.3425 1.86e-09 7vzr:c
4 6r6m:B 100 73 0.2892 0.2400 0.3288 9.54e-09 6r6n:B, 6r6o:B
5 5xdh:A 86 82 0.2892 0.2791 0.2927 2.16e-07 5xdh:B, 5xdh:C, 5xdh:D
6 7vzg:C 193 86 0.2892 0.1244 0.2791 6.86e-06 7vzr:C
7 4eie:A 82 76 0.2771 0.2805 0.3026 5.57e-05 4eif:A
8 2c8s:A 149 80 0.2892 0.1611 0.3000 1.46e-04
9 2d0w:A 168 83 0.2892 0.1429 0.2892 1.52e-04 2d0w:B
10 6h5l:B 220 92 0.3253 0.1227 0.2935 2.73e-04
11 8snh:G 304 77 0.2530 0.0691 0.2727 0.002
12 5djq:C 303 77 0.2530 0.0693 0.2727 0.007 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
13 5djq:C 303 77 0.2651 0.0726 0.2857 1.8 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
14 2yev:B 319 94 0.3253 0.0846 0.2872 0.043 2yev:E
15 8hdd:B 121 84 0.2771 0.1901 0.2738 0.066
16 6rtd:B 466 38 0.2048 0.0365 0.4474 0.091 6rtd:A, 6rte:A, 6rte:B
17 1dvh:A 79 89 0.3133 0.3291 0.2921 0.17 2dvh:A, 1dwl:B, 1e08:E
18 1c6s:A 87 77 0.2410 0.2299 0.2597 0.26 6tr1:A, 6tr1:C, 6tr1:E, 6tsy:A, 6tsy:B, 6tsy:C, 6tsy:D, 6tsy:E, 6tsy:F
19 5lo9:A 471 66 0.2530 0.0446 0.3182 0.30 5lo9:B
20 5lo9:A 471 17 0.1084 0.0191 0.5294 0.58 5lo9:B
21 4kmg:A 88 65 0.2530 0.2386 0.3231 0.33
22 2c1v:A 335 25 0.1566 0.0388 0.5200 0.41 2c1u:A, 2c1u:B, 2c1u:C, 2c1u:D, 2c1v:B
23 1kv9:A 664 74 0.2530 0.0316 0.2838 0.67
24 1kb0:A 670 81 0.3012 0.0373 0.3086 0.67
25 1c53:A 79 26 0.1446 0.1519 0.4615 0.83
26 6lod:E 157 18 0.1084 0.0573 0.5000 0.96 6loe:E
27 4yo7:A 287 62 0.2651 0.0767 0.3548 1.1
28 7txe:A 131 30 0.1084 0.0687 0.3000 1.4 7txe:B
29 4v2k:A 235 22 0.1205 0.0426 0.4545 1.4 4wq7:A, 4wq8:A, 4wq9:A, 4wqa:A, 4wqb:A, 4wqc:A, 4wqd:A, 4wqe:A
30 7qhm:C 233 38 0.1928 0.0687 0.4211 1.5 7q21:C, 7q21:c, 7qhm:P, 7qho:C, 7qho:P
31 2zzs:A 81 12 0.0964 0.0988 0.6667 1.6 2zzs:B, 2zzs:C, 2zzs:D, 2zzs:E, 2zzs:F, 2zzs:G, 2zzs:H, 2zzs:I, 2zzs:J, 2zzs:K, 2zzs:L, 2zzs:M, 2zzs:N, 2zzs:O, 2zzs:P, 2zzs:Q, 2zzs:R, 2zzs:S, 2zzs:T, 2zzs:U, 2zzs:V, 2zzs:W, 2zzs:X, 2zzs:Y, 2zzs:Z, 2zzs:1, 2zzs:2, 2zzs:3, 2zzs:4, 2zzs:5, 2zzs:6
32 1ls9:A 91 77 0.2169 0.1978 0.2338 1.6
33 3gg2:A 431 31 0.1566 0.0302 0.4194 1.8 3gg2:D, 3gg2:B, 3gg2:C
34 5yvg:A 830 38 0.1446 0.0145 0.3158 2.1 2h4m:B, 2ot8:B, 5yvh:A
35 8sgh:A 844 38 0.1446 0.0142 0.3158 2.1 7cyl:A, 4fdd:A, 4fq3:A, 2h4m:A, 5j3v:A, 5j3v:B, 4jlq:A, 4oo6:A, 2ot8:A, 5tqc:A, 7vpw:A, 5yvi:A, 2z5k:A, 2z5m:A, 2z5n:A, 2z5o:A
36 8ulg:B 824 51 0.1928 0.0194 0.3137 2.2 7jsn:B, 6mzb:B, 8ufi:B, 8ugb:B, 8ugs:B
37 7u2v:A 114 17 0.0964 0.0702 0.4706 3.0 7u2v:B
38 5mjs:E 434 67 0.2289 0.0438 0.2836 4.9 5mjs:F, 5mjs:G, 5mjs:H, 6s8m:A
39 6gpa:A 314 23 0.1325 0.0350 0.4783 5.4 6gpa:B
40 8i90:A 440 58 0.2289 0.0432 0.3276 5.9 8i90:B, 8i94:A, 8i94:B
41 3dtf:A 363 40 0.1687 0.0386 0.3500 5.9 3dtf:B, 3dtg:A, 3dtg:B, 3jz6:A, 3jz6:B
42 1etp:A 190 10 0.0964 0.0421 0.8000 6.4 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
43 2w9m:B 559 37 0.1687 0.0250 0.3784 7.3 2w9m:A
44 1nbw:A 606 16 0.0964 0.0132 0.5000 9.0 1nbw:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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