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BioLiP
>protein
IDGMKLFLQHCKTCHGVDGNPTDLGEGLGARKFADAEWQAKTSDERIIEQINEGTPEMMMPFKEKLTPEEVKALVPVVRG
FK

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mxy:A 83 82 0.9878 0.9759 0.9878 9.39e-58 5mxz:A
2 7o38:A 81 79 0.3780 0.3827 0.3924 2.58e-14
3 7vzg:c 145 72 0.2927 0.1655 0.3333 8.33e-09 7vzr:c
4 6r6m:B 100 73 0.2927 0.2400 0.3288 9.72e-09 6r6n:B, 6r6o:B
5 5xdh:A 86 82 0.2805 0.2674 0.2805 8.32e-07 5xdh:B, 5xdh:C, 5xdh:D
6 7vzg:C 193 86 0.3049 0.1295 0.2907 1.69e-06 7vzr:C
7 4gyd:A 86 80 0.3171 0.3023 0.3250 3.34e-06 4gyd:B, 4gyd:C, 4gyd:D, 4gyd:E, 4gyd:F, 4h0j:A, 4h0j:B, 4h0j:C, 4h0j:D, 4h0j:E, 4h0j:F, 4h0k:A, 4h0k:B
8 4eie:A 82 76 0.2927 0.2927 0.3158 1.05e-05 4eif:A
9 2c8s:A 149 80 0.3049 0.1678 0.3125 5.79e-05
10 6h5l:B 220 90 0.3171 0.1182 0.2889 6.96e-04
11 7c90:A 151 77 0.2805 0.1523 0.2987 0.001 7c90:B, 7c90:C, 7c90:D
12 5djq:C 303 77 0.2683 0.0726 0.2857 0.002 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
13 5djq:C 303 77 0.2561 0.0693 0.2727 5.8 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
14 8snh:G 304 77 0.2683 0.0724 0.2857 0.005
15 8smr:G 312 76 0.2683 0.0705 0.2895 0.007
16 2yev:B 319 94 0.3415 0.0878 0.2979 0.020 2yev:E
17 1c6s:A 87 77 0.2561 0.2414 0.2727 0.070 6tr1:A, 6tr1:C, 6tr1:E, 6tsy:A, 6tsy:B, 6tsy:C, 6tsy:D, 6tsy:E, 6tsy:F
18 4kmg:A 88 65 0.2683 0.2500 0.3385 0.083
19 8hdd:B 121 84 0.2683 0.1818 0.2619 0.18
20 1dvh:A 79 89 0.3049 0.3165 0.2809 0.27 2dvh:A, 1dwl:B, 1e08:E
21 6rtd:B 466 38 0.1951 0.0343 0.4211 0.28 6rtd:A, 6rte:A, 6rte:B
22 5lo9:A 471 66 0.2561 0.0446 0.3182 0.29 5lo9:B
23 5lo9:A 471 17 0.0976 0.0170 0.4706 1.9 5lo9:B
24 1ls9:A 91 77 0.2317 0.2088 0.2468 0.35
25 7txe:A 131 30 0.1220 0.0763 0.3333 0.40 7txe:B
26 2c1v:A 335 25 0.1585 0.0388 0.5200 0.44 2c1u:A, 2c1u:B, 2c1u:C, 2c1u:D, 2c1v:B
27 7u2v:A 114 17 0.1098 0.0789 0.5294 0.79 7u2v:B
28 4yo7:A 287 62 0.2683 0.0767 0.3548 1.3
29 2zzs:A 81 12 0.0976 0.0988 0.6667 1.6 2zzs:B, 2zzs:C, 2zzs:D, 2zzs:E, 2zzs:F, 2zzs:G, 2zzs:H, 2zzs:I, 2zzs:J, 2zzs:K, 2zzs:L, 2zzs:M, 2zzs:N, 2zzs:O, 2zzs:P, 2zzs:Q, 2zzs:R, 2zzs:S, 2zzs:T, 2zzs:U, 2zzs:V, 2zzs:W, 2zzs:X, 2zzs:Y, 2zzs:Z, 2zzs:1, 2zzs:2, 2zzs:3, 2zzs:4, 2zzs:5, 2zzs:6
30 3gg2:A 431 31 0.1585 0.0302 0.4194 1.7 3gg2:D, 3gg2:B, 3gg2:C
31 2dge:A 102 88 0.2927 0.2353 0.2727 1.8 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
32 1kv9:A 664 74 0.2439 0.0301 0.2703 1.8
33 6lod:E 157 18 0.0976 0.0510 0.4444 1.9 6loe:E
34 1c53:A 79 26 0.1341 0.1392 0.4231 2.0
35 5yvg:A 830 38 0.1463 0.0145 0.3158 2.1 2h4m:B, 2ot8:B, 5yvh:A
36 8sgh:A 844 38 0.1463 0.0142 0.3158 2.1 7cyl:A, 4fdd:A, 4fq3:A, 2h4m:A, 5j3v:A, 5j3v:B, 4jlq:A, 4oo6:A, 2ot8:A, 5tqc:A, 7vpw:A, 5yvi:A, 2z5k:A, 2z5m:A, 2z5n:A, 2z5o:A
37 8ulg:B 824 50 0.1951 0.0194 0.3200 2.7 7jsn:B, 6mzb:B, 8ufi:B, 8ugb:B, 8ugs:B
38 4v2k:A 235 22 0.1098 0.0383 0.4091 4.3 4wq7:A, 4wq8:A, 4wq9:A, 4wqa:A, 4wqb:A, 4wqc:A, 4wqd:A, 4wqe:A
39 6btm:E 161 18 0.1098 0.0559 0.5000 4.3
40 7qhm:C 233 38 0.1829 0.0644 0.3947 4.3 7q21:C, 7q21:c, 7qhm:P, 7qho:C, 7qho:P
41 5mjs:E 434 67 0.2317 0.0438 0.2836 4.5 5mjs:F, 5mjs:G, 5mjs:H, 6s8m:A
42 1cyc:A 103 48 0.2073 0.1650 0.3542 4.9 1cyc:B, 3cyt:O, 3cyt:I, 5cyt:R, 1i54:A, 1i54:B, 1i55:A, 1i55:B, 1lfm:A, 1lfm:B
43 3dp5:A 99 18 0.1098 0.0909 0.5000 5.5 3cu4:A, 5mcs:A, 6u97:A
44 6gpa:A 314 23 0.1341 0.0350 0.4783 5.6 6gpa:B
45 3dtf:A 363 40 0.1707 0.0386 0.3500 5.8 3dtf:B, 3dtg:A, 3dtg:B, 3jz6:A, 3jz6:B
46 8i90:A 440 58 0.2317 0.0432 0.3276 5.8 8i90:B, 8i94:A, 8i94:B
47 1etp:A 190 10 0.0976 0.0421 0.8000 6.2 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
48 4yuu:V1 129 13 0.0854 0.0543 0.5385 7.6 4yuu:v1, 4yuu:V2, 4yuu:v2
49 2w9m:B 559 37 0.1707 0.0250 0.3784 7.8 2w9m:A
50 2aiu:A 104 16 0.0976 0.0769 0.5000 7.8
51 1e29:A 135 36 0.1463 0.0889 0.3333 8.5 7n8o:V, 7n8o:v, 7rcv:V, 7rcv:v, 8tow:V, 8tow:v
52 1nbw:A 606 16 0.0976 0.0132 0.5000 9.2 1nbw:C
53 6tp9:A 85 56 0.2073 0.2000 0.3036 9.8 6tp9:C, 6tp9:B, 6tp9:F, 6tp9:D, 6tp9:J, 6tp9:E, 6tp9:K, 6tp9:G, 6tp9:H, 6tp9:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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