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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IAYVIGYVCVYNKGYQDTDTVLSSVTTKVKGIALTNTSELGERIWDVADYIIPPQEDGSFFVLTNMIITTNQTQSKCAEN
PTPASTCTSHRDCKRGFNDARGDGVRTGRCVSYSASVKTCEVLSWCPLEKIVDPPNPPLLADAENFTVLIKNNIRYPKFN
FNKRNILPNINSSYLTHCVFSRKTDPDCPIFRLGDIVGEAEEDFQIMAVRGGVMGVQIRWDCDLDMPQSWCVPRYTFRRL
DNKDPDNNVAPGYNFRFAKYYKNSDGTETRTLIKGYGIRFDVMVFGQAGKFNIIPTLLNIGAGLALLGLVNVICDW

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4dw1:A 324 316 0.9937 0.9691 0.9937 0.0 8jv5:A, 8jv5:B, 8jv5:C, 8jv6:A, 8jv6:B, 8jv6:C, 5wzy:A
2 5xw6:C 320 315 0.4684 0.4625 0.4698 6.34e-105 5xw6:B, 5xw6:A
3 5u1x:A 321 316 0.4810 0.4735 0.4810 6.72e-103 8jv7:A, 8jv7:B, 8jv7:C, 8jv8:A, 8jv8:B, 8jv8:C, 5u1u:A, 5u1y:A
4 6ah4:B 357 316 0.4778 0.4230 0.4778 3.26e-102 6ah4:C, 6ah4:A, 6ah5:C, 6ah5:A, 6ah5:B, 9ik1:A, 9ik1:B, 9ik1:C, 5svk:A, 5svk:B, 5svl:A, 5svl:B, 5svm:A, 5svm:B, 5svp:A, 5svp:B, 5svq:A, 5svr:A, 5yve:A
5 6u9w:A 562 318 0.4747 0.2669 0.4717 1.25e-97 8tr5:A, 8tr5:B, 8tr5:C, 8trj:A, 8trj:C, 8trj:B, 6u9v:A, 6u9v:B, 6u9v:C, 6u9w:B, 6u9w:C, 8v4s:A, 8v4s:B, 8v4s:C
6 5f1c:B 355 336 0.4557 0.4056 0.4286 1.09e-90 5f1c:A, 5f1c:C
7 7tj9:A 1111 58 0.0570 0.0162 0.3103 2.8
8 7xpi:A 363 48 0.0443 0.0386 0.2917 2.9 7ytl:A
9 4yis:A 295 58 0.0570 0.0610 0.3103 4.9 4yis:B
10 2qo3:B 873 27 0.0380 0.0137 0.4444 6.6 2qo3:A
11 8xku:D 805 66 0.0633 0.0248 0.3030 7.7
12 6vtu:H 220 27 0.0380 0.0545 0.4444 8.7
13 5m1i:A 539 57 0.0633 0.0371 0.3509 8.8 6gta:A, 6gvd:A, 6gwf:A, 6gwg:A, 6gx8:A, 5m0x:A, 5m12:A, 5m16:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218