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BioLiP
>protein
IAVGKDAPDFTLQSMDGKEVKLSDFKGKKVYLKFWASWCGPCKKSMPELMELAAKPDRDFEILTVIAPGIQGEKTVEQFP
QWFQEQGYKDIPVLYDTKATTFQAYQIRSIPTEYLIDSQGKIGKIQFGAISNADAEAAFKEMN

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2yp6:A 143 143 1.0000 1.0000 1.0000 2.56e-104 2yp6:B, 2yp6:C, 2yp6:D
2 4hqs:A 135 134 0.3986 0.4222 0.4254 4.88e-37
3 4grf:A 140 125 0.2587 0.2643 0.2960 3.03e-10
4 3lwa:A 167 137 0.2448 0.2096 0.2555 4.86e-07
5 6gxg:B 147 105 0.2098 0.2041 0.2857 7.24e-07 6gxg:A, 6gxg:C, 6gxy:A, 6gxy:B, 6gxy:C
6 1i5g:A 144 124 0.2238 0.2222 0.2581 6.06e-06
7 6slo:A 214 102 0.2168 0.1449 0.3039 1.36e-05 6lur:B, 6lur:C, 6lur:D, 6lur:A, 6lur:E, 6slo:C, 6slo:D
8 5g31:A 105 49 0.1469 0.2000 0.4286 2.31e-05
9 2xc2:A 110 113 0.2028 0.2636 0.2566 4.53e-05 2xbq:A
10 6yt3:B 376 102 0.2168 0.0824 0.3039 4.92e-05 4f6t:B, 6gu5:B, 6guj:B, 6gx4:B, 6h6w:B, 6h73:B, 6h74:B, 6h8b:B, 6h8h:B, 4ndo:B, 4ndp:B, 4ndq:B, 4ndr:B, 5o5w:B, 6ris:B, 6rj4:B, 6rj4:D, 6rj4:F, 6rkd:B, 6rkd:F, 6rkd:D, 6rkd:H, 6rkd:J, 6rkd:L, 6rke:B, 6rke:D, 6rke:F, 6rke:H, 6rke:J, 6rke:L, 7z5j:B, 7z5j:D, 7z5j:F, 7z5j:H, 7z5j:J, 7z5j:L, 7zqq:B, 7zr4:B, 7zse:B
11 7ysi:A 143 126 0.2168 0.2168 0.2460 8.66e-05
12 3s9f:A 144 94 0.1748 0.1736 0.2660 9.99e-05
13 7scd:A 371 102 0.2168 0.0836 0.3039 1.20e-04 3bd9:A, 7sce:A
14 1nw2:A 105 68 0.1678 0.2286 0.3529 1.55e-04 1nw2:B, 1nw2:C, 1nw2:D, 1nw2:E, 1nw2:F, 1nw2:H
15 3o6t:B 110 36 0.1049 0.1364 0.4167 2.02e-04 3o6t:A, 3o6t:C, 3o6t:D
16 7d6l:A 142 114 0.2028 0.2042 0.2544 4.58e-04
17 6z7o:A 110 44 0.1189 0.1545 0.3864 6.13e-04
18 2ppt:A 149 57 0.1189 0.1141 0.2982 0.001 2ppt:B
19 5crw:A 242 108 0.2238 0.1322 0.2963 0.003
20 3f3q:A 109 99 0.2098 0.2752 0.3030 0.004 3f3r:A, 3f3r:B
21 5ykw:A 106 72 0.1678 0.2264 0.3333 0.005
22 1v98:A 92 61 0.1259 0.1957 0.2951 0.006 1v98:B
23 3p2a:A 145 26 0.0839 0.0828 0.4615 0.012 3p2a:B, 3p2a:C, 3p2a:D
24 3hxs:A 117 68 0.1399 0.1709 0.2941 0.018 3hyp:A
25 3lor:B 154 125 0.1958 0.1818 0.2240 0.038
26 2p5r:A 164 56 0.1469 0.1280 0.3750 0.041
27 3idv:A 235 24 0.0839 0.0511 0.5000 0.074
28 3idv:A 235 26 0.0979 0.0596 0.5385 0.16
29 7e4u:A 176 37 0.1189 0.0966 0.4595 0.086 7e4u:B, 7e4u:D, 7e4u:F, 7e4u:I
30 6i7s:B 462 20 0.0699 0.0216 0.5000 0.12 6i7s:A
31 6i7s:B 462 28 0.0839 0.0260 0.4286 0.18 6i7s:A
32 4pom:A 107 28 0.0909 0.1215 0.4643 0.17 1cqg:A, 1cqh:A, 1mdi:A, 1mdj:A, 1mdk:A, 4pol:A, 4pol:B
33 1y25:A 165 44 0.1119 0.0970 0.3636 0.21 1y25:B
34 6ibl:A 397 102 0.2028 0.0730 0.2843 0.27 5a8e:A, 4ami:A, 4ami:B, 4amj:A, 4amj:B, 4bvn:A, 8dcr:R, 8dcs:R, 2eiq:A, 2eiq:B, 2eir:A, 2eir:B, 2eir:C, 2eir:D, 5f8u:B, 5f8u:A, 6h7j:A, 6h7j:B, 6h7l:A, 6h7l:B, 6h7m:A, 6h7m:B, 6h7n:A, 6h7n:B, 6h7o:A, 6h7o:B, 5hr0:A, 5hr0:B, 5hr1:D, 5hr2:A, 4hu7:A, 4hu7:B, 4hu9:A, 4hua:A, 6ibl:B, 7jjo:R, 1keb:A, 1keb:B, 7s0f:R, 7s0g:R, 1tho:A, 6tko:A, 2trx:A, 2trx:B, 1txx:A, 2vt4:A, 2vt4:B, 2vt4:C, 2vt4:D, 2y00:A, 2y00:B, 2y01:A, 2y01:B, 2y02:A, 2y02:B, 2y03:A, 2y03:B, 2y04:A, 2y04:B, 2ycw:A, 2ycw:B, 2ycx:A, 2ycx:B, 2ycy:A, 2ycy:B, 2ycz:A, 2ycz:B, 3zpq:A, 3zpq:B, 3zpr:A, 3zpr:B
35 6c66:M 244 68 0.1399 0.0820 0.2941 0.66 5u07:N, 5u0a:N
36 7lj1:G 182 140 0.2657 0.2088 0.2714 1.1 7wet:A, 7wet:B, 8x71:B, 8x73:B
37 6iwq:A 546 41 0.1049 0.0275 0.3659 2.2 6iwq:B, 6iwq:C, 6iwq:D, 6iwq:E, 6iwq:F, 6iwr:A, 6iwr:B, 6iwr:C, 6iwr:D, 6iwr:E, 6iwr:F
38 7u4m:A 171 53 0.0909 0.0760 0.2453 2.5 5h5q:A, 5h5r:A, 5h5s:A, 6hkq:A, 7u4i:A, 7u4i:B, 7u4k:A, 7u4l:A, 7u4l:B, 7u4l:D, 7u4n:A, 7u4n:B
39 5ayk:A 744 63 0.1259 0.0242 0.2857 2.8 5ayl:A
40 1xzo:A 172 59 0.1189 0.0988 0.2881 5.3 1xzo:B
41 7du5:B 118 31 0.0839 0.1017 0.3871 5.6 7du5:A, 5hjz:A, 5hjz:B
42 7o85:A 332 46 0.1189 0.0512 0.3696 6.4 7o85:D, 7o85:G, 7o85:J, 7o85:M, 7o85:P, 7o85:S
43 1z45:A 674 41 0.0909 0.0193 0.3171 6.6
44 3dm5:A 416 60 0.1329 0.0457 0.3167 6.6 3dm5:B
45 6dnl:A 115 50 0.1119 0.1391 0.3200 6.7
46 5jmd:A 646 72 0.1329 0.0294 0.2639 7.9 5jmf:A
47 7cfk:B 166 45 0.0909 0.0783 0.2889 8.0 7cfi:A, 7cfk:A
48 4r4u:A 277 45 0.0839 0.0433 0.2667 9.6 4r4u:B, 4r4u:D, 4r4u:C
49 4wbr:D 157 131 0.2028 0.1847 0.2214 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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