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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
IAKIPLDIDTSLVSDGTATAFDPDSLVAERFKIDRDVPVALQQQMSVEAPSNADVVTFQVGTTLRRTDRQQDAGLLLALV
DTVTMNRNTAEAVNIALPHEGLTYRFPFDTEKKTYPFFDPIAQKAFDANYDGEEDVNGLTTYRFVQNVGYDADGKLADPI
KYSADASVTARAEVWGVPGEPDESITMDRFYAASRTFWVDPVSGTIVKSEEHGYQYYAREALKPEVTYVDFKVTTNEESV
ESQVAAASDERDRIALWTR

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7shw:B 259 259 1.0000 1.0000 1.0000 0.0 7shw:A
2 5dye:D 253 34 0.0386 0.0395 0.2941 0.75 5c5x:A, 5c5x:B, 5c5x:C, 5c5x:D, 5c5x:E, 5c5x:H, 3d9s:C, 3d9s:D, 5dye:A, 5dye:B, 5dye:C
3 5efv:B 635 45 0.0502 0.0205 0.2889 2.9 5efv:A, 5efv:C, 6v8i:BH, 6v8i:BG, 6v8i:BI, 6v8i:DH, 6v8i:DG, 6v8i:DI, 6v8i:AH, 6v8i:AG, 6v8i:AI, 6v8i:FH, 6v8i:FG, 6v8i:FI, 6v8i:CH, 6v8i:CG, 6v8i:CI, 6v8i:EH, 6v8i:EG, 6v8i:EI
4 5xxu:G 220 62 0.0734 0.0864 0.3065 4.4
5 1yle:A 330 35 0.0425 0.0333 0.3143 6.0
6 5m1d:A 469 53 0.0695 0.0384 0.3396 7.5 5m1d:B, 5m1d:C, 5m1e:A, 5m1e:B, 5m1e:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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