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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IAGRIVVLDPGHNGANDSSINNQVPDGRGGTKSCQTSGTATDGGYPEHTFTWNTVLLIRQQLTQLGVRTAMTRGDDNKLG
PCIDKRAEIENSYNPDAVVSIHADGGPAGGHGFHVNYSNPPVNAVQGEPTLRFAKTMRDSLQAAGLTPATYIGTGGLYGR
SDLAGLNLAQHPKVLVELGNMKNAQDSAMMTSPEGRSKYAQAVVQGIVAYLSGT

The query sequence (length=214) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ago:A 214 214 1.0000 1.0000 1.0000 4.07e-160 7agl:A
2 7agm:A 218 211 0.6822 0.6697 0.6919 1.66e-107 7agm:B
3 4m6g:A 214 212 0.6495 0.6495 0.6557 1.33e-106 4lq6:A, 4m6i:A, 4m6i:B
4 5j72:A 638 194 0.2477 0.0831 0.2732 7.65e-10 5j72:B
5 7tj4:B 176 215 0.2523 0.3068 0.2512 2.84e-07 7tj4:D
6 5emi:A 180 210 0.2477 0.2944 0.2524 7.41e-06
7 8c2o:A 228 242 0.2477 0.2325 0.2190 1.11e-05 8c2o:B
8 8c0j:A 200 218 0.2477 0.2650 0.2431 1.90e-05 8c0j:C
9 1jwq:A 179 210 0.2523 0.3017 0.2571 1.15e-04
10 7rag:B 197 223 0.2103 0.2284 0.2018 1.94e-04
11 4rn7:A 186 208 0.2056 0.2366 0.2115 8.60e-04
12 3ne8:A 226 237 0.2243 0.2124 0.2025 0.014
13 4ztc:A 385 47 0.0794 0.0442 0.3617 0.13 1o61:A, 1o61:B, 1o69:A, 1o69:B
14 4bin:A 348 241 0.2336 0.1437 0.2075 0.13
15 7b3n:B 170 206 0.2430 0.3059 0.2524 0.19 7b3n:A, 7b3n:C, 7b3n:D, 7b3n:E
16 4gfr:A 529 97 0.0935 0.0378 0.2062 6.7 8i5j:A, 8i5j:B, 8i5k:A, 1zu0:A
17 7ebi:A 537 96 0.0981 0.0391 0.2188 9.3 7ebm:A, 6lzq:A, 6lzt:A, 6lzu:A, 6lzv:A, 6lzw:A
18 7dnm:A 336 70 0.0981 0.0625 0.3000 9.5 7dnm:P, 7dnn:A, 7dnn:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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