Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IAGRIVVLDPGHNGANDSSINNQVPDGRGGTKSCQTSGTATDGGYPEHTFTWNTVLLIRQQLTQLGVRTAMTRGDDNKLG
PCIDKRAEIENSYNPDAVVSIHADGGPAGGHGFHVNYSNPPVNAVQGEPTLRFAKTMRDSLQAAGLTPATYIGTGGLYGR
SDLAGLNLAQHPKVLVELGNMKNAQDSAMMTSPEGRSKYAQAVVQGIVAYLS

The query sequence (length=212) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ago:A 214 212 1.0000 0.9907 1.0000 7.92e-159 7agl:A
2 7agm:A 218 211 0.6887 0.6697 0.6919 1.52e-107 7agm:B
3 4m6g:A 214 212 0.6557 0.6495 0.6557 9.49e-107 4lq6:A, 4m6i:A, 4m6i:B
4 5j72:A 638 194 0.2500 0.0831 0.2732 6.58e-10 5j72:B
5 7tj4:B 176 214 0.2547 0.3068 0.2523 2.88e-07 7tj4:D
6 5emi:A 180 210 0.2500 0.2944 0.2524 6.28e-06
7 8c2o:A 228 242 0.2500 0.2325 0.2190 1.01e-05 8c2o:B
8 8c0j:A 200 217 0.2500 0.2650 0.2442 1.51e-05 8c0j:C
9 1jwq:A 179 210 0.2547 0.3017 0.2571 1.01e-04
10 7rag:B 197 223 0.2123 0.2284 0.2018 1.62e-04
11 4rn7:A 186 208 0.2075 0.2366 0.2115 8.37e-04
12 3ne8:A 226 237 0.2311 0.2168 0.2068 0.015
13 4bin:A 348 241 0.2358 0.1437 0.2075 0.12
14 7b3n:B 170 206 0.2453 0.3059 0.2524 0.17 7b3n:A, 7b3n:C, 7b3n:D, 7b3n:E
15 4ztc:A 385 46 0.0755 0.0416 0.3478 0.62 1o61:A, 1o61:B, 1o69:A, 1o69:B
16 4gfr:A 529 97 0.0943 0.0378 0.2062 7.0 8i5j:A, 8i5j:B, 8i5k:A, 1zu0:A
17 7dnm:A 336 70 0.0991 0.0625 0.3000 8.7 7dnm:P, 7dnn:A, 7dnn:P
18 7ebi:A 537 96 0.0991 0.0391 0.2188 9.4 7ebm:A, 6lzq:A, 6lzt:A, 6lzu:A, 6lzv:A, 6lzw:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218