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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IAGMVVFIDPGHTSTNSGYPEHTFTWETGLRLRAALNALGVRTALSRGNDGPCVDERANMANALRPNAIVSLHADGGPAS
GRGFHVNYSAPPLNAIQAGPSVQFARIMRDQLQASGIPKANYIGQDGLYGRSDLAGLNLAQYPSILVELGNMKNPADSAL
MESAEGRQKYANALVRGVAGFLATQ

The query sequence (length=185) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4m6g:A 214 214 1.0000 0.8645 0.8645 4.49e-128 4lq6:A, 4m6i:A, 4m6i:B
2 7agm:A 218 214 0.7784 0.6606 0.6729 1.30e-101 7agm:B
3 7ago:A 214 212 0.6324 0.5467 0.5519 8.69e-82 7agl:A
4 5j72:A 638 177 0.2649 0.0768 0.2768 5.34e-10 5j72:B
5 5emi:A 180 189 0.2865 0.2944 0.2804 3.16e-08
6 8c0j:A 200 198 0.3081 0.2850 0.2879 5.26e-07 8c0j:C
7 7tj4:B 176 192 0.2432 0.2557 0.2344 7.12e-07 7tj4:D
8 4rn7:A 186 192 0.2432 0.2419 0.2344 2.05e-06
9 7rag:B 197 192 0.2162 0.2030 0.2083 7.07e-05
10 4bin:A 348 215 0.2595 0.1379 0.2233 1.61e-04
11 8c2o:A 228 220 0.2595 0.2105 0.2182 3.28e-04 8c2o:B
12 1jwq:A 179 187 0.2324 0.2402 0.2299 6.79e-04
13 7b3n:B 170 155 0.2378 0.2588 0.2839 0.082 7b3n:A, 7b3n:C, 7b3n:D, 7b3n:E
14 3ne8:A 226 221 0.2865 0.2345 0.2398 0.14
15 3be7:A 398 49 0.0919 0.0427 0.3469 4.1 3be7:E, 3be7:B, 3be7:D, 3be7:C, 3be7:F, 3be7:G, 3be7:H, 3dug:A, 3dug:B, 3dug:C, 3dug:D, 3dug:E, 3dug:F, 3dug:G, 3dug:H
16 2xdq:A 425 66 0.0973 0.0424 0.2727 5.9
17 6u6a:A 306 76 0.1243 0.0752 0.3026 6.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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