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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
IAETLTEKHTLGIEKVVATDSWRVGITSREKKLERINISAEISRRIQDEAIAYARNKGIPYLPGINGIAWKLLRLKWLGY
TDQINVVMRTVPAEWRDFLTQIMENTQMESMYSELRKVR

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6v7b:A 119 119 1.0000 1.0000 1.0000 8.81e-85 6v7b:B, 6v7b:C, 6v7b:D, 6v7b:E, 6v7b:F, 6v7b:G, 6v7b:H, 6v7b:I, 6v7b:J, 6v7b:K, 6v7b:L, 6v7b:M, 6v7b:N, 6v7b:O, 6v7b:P, 6v7b:Q, 6v7b:R, 6v7b:S, 6v7b:T, 6v7b:U, 6v7b:V, 6v7b:W
2 8pth:C 178 76 0.1597 0.1067 0.2500 0.16 8ptj:C
3 8fkp:SZ 160 22 0.0924 0.0688 0.5000 0.34 8fkq:SZ, 8fkr:SZ, 8fks:SZ, 8fkt:SZ, 8fku:SZ, 8fkv:SZ, 8fkw:SZ, 8fkx:SZ, 8fky:SZ
4 1wa3:D 203 71 0.1513 0.0887 0.2535 0.41 1wa3:A, 1wa3:B, 1wa3:C, 1wa3:E, 1wa3:F
5 4rzq:A 422 86 0.2101 0.0592 0.2907 0.84 4mv6:A, 4mv7:A, 4mv9:A
6 1kp3:A 439 38 0.1176 0.0319 0.3684 1.9 1k97:A, 1kp2:A
7 5ojg:A 260 55 0.1597 0.0731 0.3455 3.1 5ojg:B, 5oji:A, 5oji:B
8 8p5d:SH0 163 50 0.1176 0.0859 0.2800 7.2 8p60:SH0, 8p60:RH0, 7qca:SH0
9 3x1l:H 297 26 0.0840 0.0337 0.3846 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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