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BioLiP
>protein
IADSRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRYYYKLNIIRKEPGQR
LLFRFMKTPDEIMS

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8e67:F 97 94 1.0000 0.9691 1.0000 1.68e-66 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
2 1dux:C 86 84 0.4149 0.4535 0.4643 3.44e-24 1dux:F
3 8bzm:H 88 84 0.4043 0.4318 0.4524 5.81e-24 8bzm:B
4 4uuv:A 96 88 0.3830 0.3750 0.4091 1.46e-21 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
5 4bqa:A 132 96 0.4255 0.3030 0.4167 7.28e-21
6 6da1:B 138 96 0.4149 0.2826 0.4062 3.35e-20 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
7 6vgd:A 98 79 0.3830 0.3673 0.4557 8.37e-20 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
8 3zp5:A 92 79 0.3723 0.3804 0.4430 3.40e-19
9 1yo5:C 88 82 0.4255 0.4545 0.4878 5.84e-19
10 3jtg:A 95 85 0.3404 0.3368 0.3765 1.59e-18
11 7jsa:J 88 79 0.3511 0.3750 0.4177 6.79e-17 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
12 1awc:A 110 80 0.3404 0.2909 0.4000 9.83e-17
13 1hbx:G 112 70 0.3191 0.2679 0.4286 7.86e-16 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
14 8eo4:F 95 82 0.3085 0.3053 0.3537 1.65e-07 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 9ene:A 329 48 0.1809 0.0517 0.3542 0.056 9enb:A, 9enb:B, 9enc:A, 9enc:B, 9ene:B, 9enf:B, 8okd:A, 8okd:B
16 6woo:1 600 28 0.1064 0.0167 0.3571 0.86 4ncf:A, 4ncf:B, 3wbk:A
17 6uz7:1 600 28 0.0957 0.0150 0.3214 1.2 4v8y:CP
18 9enf:A 254 35 0.1277 0.0472 0.3429 1.5
19 3zl8:A 427 72 0.2128 0.0468 0.2778 2.4
20 6wlw:U 205 36 0.1064 0.0488 0.2778 4.2 6wm2:U
21 3gfa:A 197 80 0.2234 0.1066 0.2625 5.2 3gfa:B
22 5guh:A 759 102 0.3404 0.0422 0.3137 5.6
23 7agv:F 163 31 0.1277 0.0736 0.3871 5.7 7agv:A, 7agv:B, 7agv:C, 7agv:D, 7agv:E, 7agv:G, 7agv:H, 7ahm:A, 7ahm:B, 7ahm:C, 7ahm:D
24 2hxs:A 178 88 0.2021 0.1067 0.2159 8.1 3e5h:A
25 7vpu:A 275 35 0.1064 0.0364 0.2857 8.2 7vpu:B, 7vpu:C, 7vpu:D
26 8bpd:A 370 61 0.2128 0.0541 0.3279 8.3
27 7mca:C 584 21 0.1064 0.0171 0.4762 8.5 6rqc:C, 6wgi:C, 5zr1:C
28 7tjf:C 554 21 0.1064 0.0181 0.4762 9.2 7tjh:C, 7tji:C, 7tjj:C, 7tjk:C
29 6ful:A 478 46 0.1277 0.0251 0.2609 9.2 5a1l:A, 5a1l:B, 3avr:A, 3avs:A, 6fuk:A, 5fxv:A, 5fxv:B, 5fxw:A, 5fxw:B, 5fxx:A, 5fxx:B, 5fxz:A, 5fxz:B, 5fy0:A, 5fy0:B, 5fy1:A, 5fy1:B, 5fy7:A, 5fy7:B, 5fym:A, 5fym:B, 6g8f:A, 4uf0:A, 4uf0:B, 3zli:A, 3zli:B, 3zpo:A, 3zpo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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