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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HVRRDATTDGLTNLANRKAFDDELDRACAEAEEGGTTICLAVLDIDHFKGFNDTWGHQTGDQVIRYVASVIGRVAAPPRF
AARYGGEEFAMIFPREAASVVATTLEEIRVEVSSRMLKRRSTNEDLGAITVSSGFAERKPGESGHSVMERADAALYASKR
GGRNRVTAAES

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ttr:B 195 169 0.9708 0.8513 0.9822 1.01e-120 6ttr:A, 6tts:A, 6tts:B
2 5euh:A 164 168 0.4211 0.4390 0.4286 6.79e-31 5euh:B
3 3i5c:B 198 174 0.3567 0.3081 0.3506 2.81e-28 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
4 3bre:B 328 174 0.3626 0.1890 0.3563 3.61e-27 3bre:A
5 3i5a:A 319 170 0.3509 0.1881 0.3529 1.08e-26
6 4zvf:A 164 158 0.3333 0.3476 0.3608 4.65e-26
7 3ign:A 166 165 0.3567 0.3675 0.3697 1.38e-25
8 7e6g:A 264 161 0.3450 0.2235 0.3665 3.29e-25
9 6zxb:A 293 170 0.3041 0.1775 0.3059 1.33e-24 6zxb:B, 6zxc:A, 6zxc:B, 6zxc:C, 6zxc:D, 6zxm:A, 6zxm:B, 6zxm:C, 6zxm:D, 6zxm:E, 6zxm:F
10 8c05:A 305 170 0.3392 0.1902 0.3412 4.29e-24
11 2v0n:A 459 163 0.3450 0.1285 0.3620 8.36e-23 2v0n:B, 1w25:A, 1w25:B, 2wb4:A, 2wb4:B
12 5llw:B 673 163 0.2982 0.0758 0.3129 1.40e-22 5llw:A, 5llx:A, 5llx:B, 5lly:D, 5lly:A, 5lly:C, 5lly:B, 6saw:A, 6saw:B, 6saw:C, 6saw:D, 6saw:E, 6saw:F, 6saw:G, 6saw:H, 6sax:B, 6sax:A
13 6et7:A 646 160 0.2924 0.0774 0.3125 2.81e-22 6et7:B
14 6hbz:B 270 164 0.3392 0.2148 0.3537 2.82e-22 6hbz:A, 6hc0:D, 6hc1:A
15 5euh:D 142 163 0.3684 0.4437 0.3865 3.01e-21 5euh:C
16 4wxw:A 165 165 0.3216 0.3333 0.3333 7.43e-21
17 4h54:A 274 162 0.3216 0.2007 0.3395 6.07e-18 4h54:B, 3t9o:A, 3tvk:A
18 6d9m:A 326 160 0.3099 0.1626 0.3312 7.17e-18
19 5xgd:A 548 170 0.3392 0.1058 0.3412 7.90e-17 8pps:A, 8pps:B, 5xge:A
20 4zmm:A 164 169 0.3626 0.3780 0.3669 1.78e-16 4zmm:B
21 8wcn:A 379 163 0.3099 0.1398 0.3252 3.11e-16 8wcn:B
22 4rnh:A 423 164 0.2924 0.1182 0.3049 3.60e-14
23 4urs:A 162 156 0.2865 0.3025 0.3141 4.17e-14 4urg:A, 4urs:B
24 7a7e:B 176 167 0.3041 0.2955 0.3114 2.25e-12 7a7e:A, 7a7e:C
25 3qyy:B 156 167 0.2982 0.3269 0.3054 3.44e-12 3qyy:A
26 5m3c:B 426 168 0.2749 0.1103 0.2798 4.94e-12 5m3c:A
27 6pwj:A 408 121 0.1637 0.0686 0.2314 0.20 6pwj:B, 6pwk:A, 6pwk:B
28 4lem:C 544 59 0.1053 0.0331 0.3051 0.61 4ihi:A, 4jdc:A, 4lem:A, 4lem:B, 4lem:D, 4lem:F, 4ns3:A, 4ns3:B, 4ns3:C, 4ns3:D, 4ns3:E, 4ns3:F
29 4g0a:A 312 52 0.0819 0.0449 0.2692 0.76 6cy9:A, 4g0a:B, 4g0a:C, 4g0a:D, 2r7p:A, 2r8f:A
30 7etl:A 294 37 0.0819 0.0476 0.3784 3.4 7de0:B, 7de0:A, 7de0:C, 7de0:D, 7etk:A, 7etk:B, 7etl:B, 6oxh:A, 6oxh:B, 6oxj:A, 6oxj:B, 7wsb:A, 7wsb:B, 7wsb:C, 7wsb:D, 7wsb:E, 7wsb:F, 4y5s:A, 4y5s:B, 4y5t:A, 4y5t:B
31 6m6t:C 499 13 0.0585 0.0200 0.7692 4.1 6m6t:A, 6m6t:B, 6m6t:D, 6m6t:E, 6m6t:F, 6m6t:G, 6m6t:H
32 8rkq:A 547 61 0.1111 0.0347 0.3115 9.2 4e3x:A, 4e3x:B, 4lh0:A, 4lh0:B, 4lh3:A, 4lh3:B, 7mer:A, 7mer:B, 7mes:A, 7mes:B, 8rkq:D, 8rkr:A, 3v9h:A, 3v9h:B, 3v9h:C, 3v9h:D, 3v9j:A, 3v9j:B, 3v9k:A, 3v9k:B, 3v9l:A, 3v9l:B
33 6b2m:A 268 49 0.1053 0.0672 0.3673 9.3 6b2m:B, 6b2m:C, 6b2m:D, 6b2m:E, 6b2m:F, 5udr:A, 5udr:B, 5udr:C, 5udr:D, 5udr:E, 5udr:F, 5uds:A, 5uds:B, 5uds:C, 5uds:D, 5uds:E, 5uds:F, 5udt:A, 5udt:B, 5udt:C, 5udx:D, 5udx:F, 6utp:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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