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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HVPPHVPFELSGAELRDAIVQYATNPIYHDNLDWLNHDNPYRRQLRPQVLPHLDYDKVPGRENILNYASLAVQRLLTSVY
EADLVFFPKSGLKGKEEDFRAFYSPANRALGERIRPALERYAFGFLDDEVETTWTAQSLDAYLDSLDTGAEQSPVEKAIL
GSADRERAARMWLVQFAPDFLSEASPMMRNVLGYYGPAQSEWFKVVIDEYGYGVHDTKHSTLFERTLESVGLESDLHRYW
QYYLNSSLLLNNYFHYLGKNHELFFRYVGALYYTESSLVDFCRRADHLLREVFGDTVDTTYFTEHIGRMAREKIIKPLVE
AHGDGIIPEIVRGIEEYRVLLEIGDFDFSEQIAWMDAQPELKKLHDPVFEGLKQGKVDAPVAHLVEPRGELSNTHCHDGD
ELCHIVSGTMRFESGLGSSLTLQAGEGVVIKRNRLHGANIESDECVYEIHSVGDYRKCL

The query sequence (length=459) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6vzy:A 464 465 0.9869 0.9763 0.9742 0.0 8e8w:A, 8e8w:B, 6m9r:A, 6m9r:B, 6m9s:A, 6m9s:B, 6m9s:C, 6m9s:D, 6vzy:B
2 7zyb:A 112 50 0.0327 0.1339 0.3000 0.24 7zyc:A
3 4ac8:A 311 28 0.0240 0.0354 0.3929 1.6 4ac8:B, 4ac8:C, 4ac8:D, 3ee4:A
4 7dnp:A 174 65 0.0349 0.0920 0.2462 2.7
5 4pne:B 272 50 0.0349 0.0588 0.3200 3.6 4pne:A
6 3es7:A 387 163 0.0871 0.1034 0.2454 5.0 3es7:B, 3es8:A, 3es8:B, 3es8:C, 3es8:D, 3es8:E, 3es8:F, 3es8:G, 3es8:H, 3fyy:A, 3fyy:B, 3hpf:A, 3hpf:B, 2oqy:A, 2oqy:B, 2oqy:C, 2oqy:D, 2oqy:E, 2oqy:F, 2oqy:G, 2oqy:H
7 5fpx:B 107 52 0.0327 0.1402 0.2885 5.3 5fpx:A
8 5li0:E 218 52 0.0305 0.0642 0.2692 8.2 7asm:D, 7asn:D, 7aso:e, 7asp:D, 6ddd:L, 6ddg:L, 6fxc:AD, 6fxc:BD, 5hkv:B, 5hl7:B, 6hma:D, 5nd8:E, 5nd9:E, 5ngm:AD, 7nhl:H, 7nhm:H, 5nrg:B, 8p2f:H, 8p2g:H, 8p2h:H, 7p48:D, 6s0x:D, 6s0z:D, 6s12:D, 6s13:D, 6sj6:E, 5t7v:LC, 5tcu:LC, 7ttu:L, 7ttw:L, 4wce:B, 4wf9:B, 4wfa:B, 4wfb:B, 6wqn:L, 6wqq:L, 6wrs:L, 6wru:L, 8y36:D, 8y37:D, 8y38:D, 8y39:D, 6yef:E
9 6kqs:A 620 30 0.0283 0.0210 0.4333 9.4 6kqt:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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