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BioLiP
>protein
HVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVDTEFQHPCFLR
GQEQLLENIKRKV

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dcj:B 110 103 1.0000 0.8455 0.9029 1.56e-64 5d5u:B, 5d5v:B, 5d5v:D, 7dcj:A, 7dcs:A, 7dcs:B, 7dcs:C, 7dcs:D, 7dcs:E, 7dcs:F, 7dct:A, 7dct:B, 7dct:C, 7dct:D, 7dct:E, 7dct:F, 5hdn:A, 5hdn:C
2 7dcu:A 101 94 0.7312 0.6733 0.7234 6.91e-45 7dci:A, 7dcu:C
3 5d8k:B 106 106 0.7204 0.6321 0.6321 1.05e-42 5d8l:B, 5d8l:D, 5d8l:F, 5d8l:H, 7dcu:B
4 1fyk:A 88 70 0.4301 0.4545 0.5714 3.23e-24 3hts:B
5 5d5x:B 99 97 0.4516 0.4242 0.4330 9.12e-23 5d5w:B, 5d5x:E
6 3e8s:A 220 33 0.1505 0.0636 0.4242 0.33
7 1u2g:B 359 36 0.1075 0.0279 0.2778 0.75 2fr8:A
8 1f8g:A 382 36 0.1075 0.0262 0.2778 0.76 1f8g:B, 1f8g:C, 1f8g:D, 2frd:A, 2frd:B, 2fsv:A, 1hzz:A, 1l7e:A, 1l7e:D, 1nm5:A, 1nm5:B, 2oo5:A, 2oo5:B, 2oor:A, 2oor:B, 1ptj:A, 1u28:A, 1u28:B, 1u2d:A, 1u2d:B, 1u2g:A, 1xlt:A, 1xlt:B, 1xlt:D, 1xlt:E, 1xlt:H, 1xlt:G
9 7b0c:A 144 55 0.1720 0.1111 0.2909 0.83 7b0c:B, 5n07:A
10 7yni:A 566 31 0.1183 0.0194 0.3548 2.5
11 7sla:A 585 31 0.1183 0.0188 0.3548 2.5 7sl8:A
12 7wmv:A 602 31 0.1183 0.0183 0.3548 2.5
13 3aej:A 387 20 0.1183 0.0284 0.5500 3.0 3aej:D, 3aej:B, 3aej:C, 3ael:A, 3ael:D, 3ael:B, 3ael:C, 3aem:A, 3aem:D, 3aem:B, 3aem:C, 3aen:A, 3aen:D, 3aen:B, 3aen:C, 3aeo:A, 3aeo:D, 3aeo:B, 3aeo:C, 3aep:A, 3aep:D, 3aep:B, 3aep:C
14 4ueg:B 249 93 0.2688 0.1004 0.2688 3.5 4ueg:A
15 2y6p:B 233 63 0.2688 0.1073 0.3968 3.8 2y6p:A, 2y6p:C
16 8fny:A 497 41 0.1505 0.0282 0.3415 4.4 8fny:C, 8fo6:A, 8gm5:A, 7shq:A
17 7oya:a1 147 46 0.1720 0.1088 0.3478 6.1 7oyb:a1
18 8b9z:E 214 18 0.0860 0.0374 0.4444 7.5 8ba0:E, 8esw:V2, 8esz:V2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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