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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HTTKIIMDTDPGIDDAAALTMAINDPSLDLKLVTTVAGNVTADKTTANALKIIHFFGKDIPVAAGAKQPLIKPFEDAARI
HGESGMPGYDFGDDYGKPLDKTAVEALHDAIMAEDEVILVPTGSYTNIALLFSEYPEVKSHIKQIVAMGGSFSGGNMTSA
AEFNVFTDPDAAKIMYNAGVPIVTVGLDVTLKALLTADTIEKLGSLNKTGEMLHGLITHYGRPMHDVNTIFYLLHPEAFT
TKDMWVDIQTDGPAIGATVGDIRAAYHDGKTNAKVCLDIDAEYFNKWFLEEVSKMK

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8qnd:A 297 297 0.9966 0.9933 0.9933 0.0 8qnd:C, 8qnd:B, 8qnd:D
2 3g5i:A 305 292 0.3986 0.3869 0.4041 3.34e-63 3g5i:B, 3g5i:C, 3g5i:D, 1yoe:A
3 3mkm:A 311 302 0.3784 0.3601 0.3709 4.67e-58 3b9x:A, 3b9x:B, 3b9x:D, 3mkm:B, 3mkm:C, 3mkm:D, 3mkn:A, 3mkn:B, 3mkn:C, 3mkn:D, 1q8f:A, 1q8f:B, 1q8f:C, 1q8f:D
4 4wr2:A 308 298 0.3851 0.3701 0.3826 3.04e-56
5 3b9x:C 283 291 0.3615 0.3781 0.3677 7.43e-54
6 6ba0:A 312 312 0.3649 0.3462 0.3462 3.37e-52 6ba0:B, 6ba0:C, 6ba0:D
7 5tsq:A 312 276 0.3311 0.3141 0.3551 1.97e-50
8 1ezr:A 312 294 0.3547 0.3365 0.3571 5.27e-50 8ctm:A, 8ctm:B, 8ctm:C, 8ctm:D, 1ezr:B, 1ezr:C, 1ezr:D
9 2mas:A 313 309 0.3615 0.3419 0.3463 1.54e-49 2mas:B, 2mas:C, 2mas:D
10 6ba1:A 316 312 0.3311 0.3101 0.3141 3.68e-39 6ba1:B, 6ba1:C, 6ba1:D, 6ba1:E, 6ba1:F, 6ba1:G, 6ba1:H, 6ba1:I, 6ba1:J, 6ba1:K, 6ba1:L, 6ba1:M, 6ba1:N, 6ba1:O, 6ba1:P, 6ba1:Q, 6ba1:R
11 4kpo:A 317 280 0.3311 0.3091 0.3500 1.98e-37 4kpo:B, 6zk5:A, 6zk5:B
12 6zk3:A 319 275 0.3209 0.2978 0.3455 2.55e-37 6zk1:A, 6zk1:B, 6zk1:C, 6zk1:D, 6zk2:A, 6zk2:B, 6zk2:C, 6zk2:D, 6zk3:B, 6zk3:C, 6zk3:D, 6zk3:E, 6zk3:F, 6zk4:A, 6zk4:B, 6zk4:C, 6zk4:D
13 4kpn:A 318 320 0.3446 0.3208 0.3187 6.42e-35 4kpn:B, 4kpn:C, 4kpn:D, 4kpn:E, 4kpn:F, 4kpn:G, 4kpn:H
14 3t8i:A 306 310 0.3074 0.2974 0.2935 1.02e-33 3t8i:B, 3t8i:C, 3t8i:D
15 8oi7:A 346 321 0.3243 0.2775 0.2991 6.03e-30 8oi7:B, 8oi9:A, 8oi9:B, 8oia:A, 8oia:B, 8oia:C, 8oia:D, 8oib:A, 8oib:B, 8oib:C, 8oib:D, 8oic:A, 8oic:B, 8oic:C, 8oic:D, 8oic:E, 8oic:F, 8oic:G, 8oic:H
16 8rih:B 333 323 0.3311 0.2943 0.3034 1.45e-26 8rih:A
17 8db6:B 304 179 0.2264 0.2204 0.3743 1.12e-24 8db6:A, 8db6:C, 8db6:D, 8db7:B, 8db7:A, 8db7:C, 8db7:D, 8db8:B, 8db8:A, 8db8:C, 8db8:D, 8db9:A, 8db9:B, 8db9:C, 8db9:D
18 3fz0:B 338 223 0.2399 0.2101 0.3184 2.24e-16 3fz0:A, 3fz0:C, 3fz0:D
19 2c40:A 302 218 0.1926 0.1887 0.2615 3.38e-15 2c40:B
20 5mj7:A 322 196 0.1993 0.1832 0.3010 1.67e-12 5mj7:B
21 4i72:A 328 113 0.1081 0.0976 0.2832 3.30e-05 4i70:A, 4i71:A, 4i72:B, 4i73:A, 4i73:B, 4i73:C, 4i73:D, 4i74:A, 4i75:A, 4i75:B
22 2ff2:B 327 109 0.1014 0.0917 0.2752 1.13e-04 3b9g:A, 3b9g:B, 3epw:A, 3epw:B, 3epx:A, 3epx:B, 2ff1:A, 2ff1:B, 2ff2:A, 1hoz:A, 1hoz:B, 1hp0:A, 1hp0:B, 1kic:A, 1kic:B, 1kie:A, 1kie:B, 1r4f:A, 1r4f:B
23 3cb7:A 126 76 0.0608 0.1429 0.2368 1.3
24 8gjk:C 1032 53 0.0574 0.0165 0.3208 1.4 8gjl:C, 8gk0:C, 8gk4:C
25 8h4q:N 488 28 0.0372 0.0225 0.3929 1.5 8h4h:N, 8h4h:A, 8h4q:A
26 8egs:Y 586 92 0.0878 0.0444 0.2826 5.7
27 8hyj:A 1141 78 0.0676 0.0175 0.2564 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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