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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HTSPLLAPVRQIHAFGDSYSDNGESQRLTREMLAKGIAGAQALPGEVYWQGRWSNGPTAVEVLARQLGAQLADHAVGGAK
SGADNYYGWMSAYRHTGLAGQVDAYLATLDGKPVDGQALHFIFVSAADFFEHEDFAGEQPLEQLAGSSVANIRAAVQRLG
EAGARRFLVVSSTDLSVVPAVVAGNRVERAQRYLQAVNASLPIQLAALRKTRGLELSWFDHLTFSRHLRRNPARYGLVEL
DAPCQPTQPSVRPACANPDQYYFWDEWHPTRRVHQLAGEAMAARYAR

The query sequence (length=287) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8d8x:A 287 287 0.9965 0.9965 0.9965 0.0 8d8y:A, 8d8y:B, 8d8z:A, 8d8z:B, 6uqw:A, 6uqw:B, 6uqx:A, 6uqx:B, 6uqy:A, 6uqy:B, 6uqz:A, 6uqz:B, 6ur0:A, 6ur0:B, 6ur1:A, 6ur1:B
2 8a25:A 289 294 0.2718 0.2699 0.2653 1.88e-16 8a26:A
3 8h0d:A 390 294 0.2578 0.1897 0.2517 1.13e-11 8h09:A, 8h09:B, 8h0a:B, 8h0b:B, 8h0c:A, 8h0c:B, 8h0d:B
4 6jl2:A 401 292 0.2439 0.1746 0.2397 3.85e-11 6jkz:A, 6jl2:B, 6jl2:C
5 8hwp:A 328 337 0.2683 0.2348 0.2285 3.21e-08 5xtu:A
6 3kvn:X 628 327 0.2927 0.1338 0.2569 4.86e-05 3kvn:A
7 7q8b:A 370 61 0.0592 0.0459 0.2787 1.5 8c47:A, 7q8b:B, 7q8b:C, 7q8b:D, 7q8b:E, 7q8c:A, 7q8c:B, 7q8c:C, 7q8c:D, 7q8c:E, 7q8s:A, 7q8s:C, 7q8s:D, 7q8s:E, 7q8s:F
8 4wjm:A 312 111 0.1150 0.1058 0.2973 2.5
9 6e60:A 538 68 0.0627 0.0335 0.2647 4.9 6dmf:A, 6dmf:B, 6dmf:C, 6dmf:D, 6dmf:E, 6dmf:F, 6dmf:G, 6dmf:H, 6dmf:I, 6dmf:J, 6e61:A, 6e61:B, 7nox:A, 7nox:B
10 3ffu:A 133 53 0.0697 0.1504 0.3774 5.3 3ef5:A, 3ef5:B, 3ffu:B
11 3luf:B 246 48 0.0523 0.0610 0.3125 5.6 3luf:A, 3mf4:A, 3mf4:B
12 7blz:A 743 68 0.0592 0.0229 0.2500 5.8 6fos:A, 8wey:A, 5zgb:A, 5zgh:A
13 6ly5:a 742 63 0.0523 0.0202 0.2381 5.9 6l4u:A
14 8zc9:B 971 30 0.0383 0.0113 0.3667 6.6 8wyb:A, 8wyb:B, 8wyb:C, 8wyb:D, 8wyc:A, 8wyc:B, 8wyf:A, 8wyf:B, 8zc9:E
15 4qpn:A 203 118 0.1220 0.1724 0.2966 6.8
16 1tll:A 630 53 0.0592 0.0270 0.3208 7.7 1f20:A, 1tll:B
17 6j72:A 561 39 0.0488 0.0250 0.3590 8.9
18 7svq:A 315 119 0.0836 0.0762 0.2017 9.1 7svq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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