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BioLiP
>protein
HTEKVNMMSLTVLGLRMLFAKTVAVNFLLTAKLFF

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jcb:M 233 34 0.9714 0.1459 1.0000 2.77e-16 9ci8:m, 9cia:m, 8jc0:m, 8jcb:m, 8wxe:m, 8wy0:m, 8yc0:m
2 8wyi:m 37 34 0.6286 0.5946 0.6471 1.94e-09
3 7fje:m 246 30 0.3143 0.0447 0.3667 0.042 5c07:D, 5c07:I, 5c08:D, 5c08:I, 5c09:D, 5c09:I, 5c0a:D, 5c0a:I, 5c0b:D, 5c0b:I, 5c0c:I, 5c0c:D, 5hyj:D, 5hyj:I, 6u07:A, 3uts:D, 3uts:I, 3utt:D, 3utt:I, 6vqo:D, 6vqo:H
4 7phr:A 243 30 0.3143 0.0453 0.3667 0.050 4en3:A, 4mji:D, 4mji:I, 7t2b:D, 7t2b:I, 7t2b:N, 7t2b:S, 1ymm:D
5 7yvv:A 335 14 0.2286 0.0239 0.5714 8.5
6 3ckl:B 296 15 0.2571 0.0304 0.6000 9.7 3ckl:A, 2z5f:A, 2z5f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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