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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPW
IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRPSRRVAVVRLP
LAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3h8o:A 206 204 0.9900 0.9660 0.9755 1.29e-145 3btx:A, 3bty:A, 3btz:A, 3bu0:A, 3buc:A, 3h8r:A, 3h8x:A, 4mg2:A, 4mgt:A, 3rzg:A, 3rzh:A, 3rzj:A, 3rzk:A, 3rzl:A, 3rzl:D, 3rzm:A, 3s57:A, 3s5a:A
2 8jnr:A 211 182 0.3483 0.3318 0.3846 6.49e-33 2iuw:A, 8jnk:A, 8jnk:C, 8jnk:E, 8jnk:G, 8jnr:E, 8jnr:D
3 8jnr:C 184 151 0.3085 0.3370 0.4106 2.70e-27
4 5ylb:A 187 89 0.1244 0.1337 0.2809 0.002 5yl6:A
5 5zmd:G 403 93 0.1294 0.0645 0.2796 0.80 5zmd:A, 5zmd:C, 5zmd:E
6 4ie6:A 447 93 0.1294 0.0582 0.2796 0.81 6aej:A, 6ak4:A, 6akw:A, 7ckk:A, 4cxw:A, 4cxx:A, 4cxy:A, 5dab:A, 7e8z:A, 5f8p:A, 4ie0:A, 4ie4:A, 4ie5:A, 4ie7:A, 8it9:A, 3lfm:A, 4qho:A, 4qkn:A, 7wcv:A, 4zs2:A, 4zs3:A
7 7xya:F 302 41 0.0746 0.0497 0.3659 1.1
8 5zve:B 384 83 0.1194 0.0625 0.2892 2.2 5zve:A, 5zvg:B, 5zvg:A, 5zvh:B, 5zvh:A
9 5a1m:A 104 41 0.0697 0.1346 0.3415 3.3
10 1k3i:A 651 38 0.0697 0.0215 0.3684 5.6 2eib:A, 2eic:A, 2eid:A, 2eie:A, 1gof:A, 1gog:A, 2jkx:A, 1t2x:A, 8tx5:A, 8tx5:B, 8tx5:C, 8tx5:D, 8tx6:A, 2vz1:A, 2vz3:A, 2wq8:A, 6xlr:A, 6xls:A, 6xlt:A
11 3j5s:D 554 23 0.0547 0.0199 0.4783 6.8
12 2c7j:A 162 33 0.0796 0.0988 0.4848 8.9 2c7k:A, 2c7l:A, 2j96:A, 2j96:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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