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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HSVKKFLRVRIFTKIESEDDYILSGESVMDRDIRKQIQLLKKIIFEKELMYQIKKECALLISYGVSIENENKVIIELPNE
KFEIELLSLDDDLPKINDKRANLMLVMLRLLLVVIFKKTLRSRISSPHGLINLNVDDDILIIRPILGKVRFANYKLLLKK
IIKDYVLDIVPGSSITETEVENITKLNKEIRAFDKLLNIPRRELKINLPLTEHKSPNLSLMLESPNYCNALIHIKFSAGT
EANAVSFDTTFSDFKEVEDFLHFIVAEYIQQ

The query sequence (length=271) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ui9:q 515 284 0.9926 0.5223 0.9472 0.0 4h62:Q, 7uif:q, 7uig:q, 7uio:Aq, 7uio:Bq
2 4gwq:B 492 302 0.9705 0.5346 0.8709 3.79e-165 5sva:P
3 3j1o:I 318 267 0.6125 0.5220 0.6217 2.80e-76 3rj1:B, 3rj1:I, 3rj1:P
4 7mq8:LN 671 42 0.0590 0.0238 0.3810 2.2 7mq9:LN, 7mqa:LN
5 4apy:A 414 79 0.0886 0.0580 0.3038 6.6 5dqn:A
6 6mve:A 680 66 0.0738 0.0294 0.3030 7.0 6cgl:A, 6cgl:B, 6cgn:A, 6mt9:A, 6mv9:A, 6mv9:B, 6mw3:D, 6mw3:C, 6myx:C, 6myx:D, 6myx:I, 6myx:J
7 5xe0:A 457 94 0.0959 0.0569 0.2766 8.3 5zit:A
8 3urh:B 465 57 0.0517 0.0301 0.2456 9.4 3urh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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