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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLH
VGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSI
FKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGSFFKNPVVSAETAK
ALLSQFPTAPNYPQADGSVKLAAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWL
EPEVRFIGASGEVSAVETIS

The query sequence (length=340) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2q85:A 341 340 1.0000 0.9971 1.0000 0.0 1mbb:A, 1mbt:A, 2mbr:A, 1uxy:A
2 3i99:A 340 333 0.4882 0.4882 0.4985 1.11e-109
3 4jay:A 338 327 0.4353 0.4379 0.4526 2.35e-80 4jay:B, 4jay:C, 4jay:D, 4jb1:A, 7or2:A, 7orz:A, 7osq:A
4 5jzx:A 364 351 0.3471 0.3242 0.3362 5.75e-43 5jzx:C, 5jzx:D, 5jzx:F
5 5jzx:B 327 344 0.3176 0.3303 0.3140 2.92e-37 5jzx:E
6 4pyt:A 302 326 0.2500 0.2815 0.2607 4.62e-21
7 1hsk:A 303 328 0.2647 0.2970 0.2744 5.28e-21
8 3tx1:A 295 291 0.2382 0.2746 0.2784 2.21e-14
9 2gqt:A 267 306 0.2147 0.2734 0.2386 2.45e-04 2gqu:A
10 3tqc:B 305 67 0.0706 0.0787 0.3582 0.61 3tqc:A
11 2wtz:B 508 127 0.1029 0.0689 0.2756 1.4 2wtz:A, 2wtz:D, 2xja:A, 2xja:B, 2xja:C, 2xja:D
12 4rpa:A 308 63 0.0588 0.0649 0.3175 2.3 4rpa:B
13 3jze:A 344 147 0.1088 0.1076 0.2517 2.6 3jze:B, 3jze:C, 3jze:D
14 2y42:D 355 114 0.0971 0.0930 0.2895 3.6 4f7i:A, 4f7i:B, 4f7i:C, 4f7i:D, 1hex:A, 4wuo:A, 4wuo:B, 2y40:A, 2y40:B, 2y41:A, 2y41:B, 2y42:A, 2y42:B, 2y42:C, 2ztw:A
15 1nqu:A 154 62 0.0529 0.1169 0.2903 4.7 1nqu:B, 1nqu:C, 1nqu:D, 1nqu:E, 1nqv:A, 1nqv:B, 1nqv:C, 1nqv:D, 1nqv:E, 1nqw:A, 1nqw:B, 1nqw:C, 1nqw:D, 1nqw:E, 1nqx:A, 1nqx:E, 1nqx:B, 1nqx:C, 1nqx:D
16 6tz8:C 111 39 0.0412 0.1261 0.3590 6.2 6tz8:F
17 6z1p:Ap 119 100 0.0735 0.2101 0.2500 7.8
18 2yk1:H 182 89 0.0735 0.1374 0.2809 9.9 2ykl:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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