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BioLiP
>protein
HSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLH
VGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSI
FKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGAFFKNPVVSAETAK
ALLSQFPTAPNYPQADGSVKLAAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWL
EPEVRFIGASGEVSAVETIS

The query sequence (length=340) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2q85:A 341 340 0.9971 0.9941 0.9971 0.0 1mbb:A, 1mbt:A, 2mbr:A, 1uxy:A
2 3i99:A 340 333 0.4853 0.4853 0.4955 3.38e-109
3 4jay:A 338 327 0.4324 0.4349 0.4495 7.89e-80 4jay:B, 4jay:C, 4jay:D, 4jb1:A, 7or2:A, 7orz:A, 7osq:A
4 5jzx:A 364 351 0.3441 0.3214 0.3333 2.15e-42 5jzx:C, 5jzx:D, 5jzx:F
5 5jzx:B 327 344 0.3147 0.3272 0.3110 8.72e-37 5jzx:E
6 4pyt:A 302 326 0.2471 0.2781 0.2577 1.28e-20
7 1hsk:A 303 328 0.2618 0.2937 0.2713 1.42e-20
8 3tx1:A 295 291 0.2353 0.2712 0.2749 6.11e-14
9 2gqt:A 267 306 0.2147 0.2734 0.2386 2.24e-04 2gqu:A
10 3tqc:B 305 67 0.0676 0.0754 0.3433 1.3 3tqc:A
11 4rpa:A 308 63 0.0588 0.0649 0.3175 2.2 4rpa:B
12 2wtz:B 508 127 0.1029 0.0689 0.2756 2.3 2wtz:A, 2wtz:D, 2xja:A, 2xja:B, 2xja:C, 2xja:D
13 3jze:A 344 147 0.1088 0.1076 0.2517 2.6 3jze:B, 3jze:C, 3jze:D
14 2y42:D 355 114 0.0971 0.0930 0.2895 4.9 4f7i:A, 4f7i:B, 4f7i:C, 4f7i:D, 1hex:A, 4wuo:A, 4wuo:B, 2y40:A, 2y40:B, 2y41:A, 2y41:B, 2y42:A, 2y42:B, 2y42:C, 2ztw:A
15 1nqu:A 154 62 0.0529 0.1169 0.2903 4.9 1nqu:B, 1nqu:C, 1nqu:D, 1nqu:E, 1nqv:A, 1nqv:B, 1nqv:C, 1nqv:D, 1nqv:E, 1nqw:A, 1nqw:B, 1nqw:C, 1nqw:D, 1nqw:E, 1nqx:A, 1nqx:E, 1nqx:B, 1nqx:C, 1nqx:D
16 6z1p:Ap 119 100 0.0735 0.2101 0.2500 7.3
17 6tz8:C 111 38 0.0412 0.1261 0.3684 7.7 6tz8:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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