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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HSAYTLPDPLVGADGTRVHDRATWQHRRRPELLQLFAREVYGRTPLGRPEGMVFKVTTMEHAALGGAATRKEVTVRFGRD
PNAPSMQLLLYVPNAVIARAERAPVFLGLNFYGNHTVHTDPAIALSARWIPAEAPNGANHRATEAARGSDAQKWPVEQIL
ARGYAVATVYCGDLCPDRPDGLNASVASWLDAAAGDQRAPDAWGAIGVWAWGLSRALDYLETDPLVDASRVAVHGHSRLG
KAALWAGAQDDRFALVISNESGCGGAALSKRIHGETVARINTVFPHWFARNFRRYDDHEEALPVDQHELLALVAPRPLYV
ASAEDDDWADPRGEFLAVKAAEPVFRLFGQTGPSGEDVPRVNEPSGGALRYHIRPGPHGMTAQDWAFYLAFADEWLKSAL
PA

The query sequence (length=402) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6syu:A 402 402 1.0000 1.0000 1.0000 0.0 6grw:A, 6gs0:A, 6syr:A, 6syv:A, 6sz0:A, 6sz4:A, 6t0e:A, 6t0e:B, 6t0i:A
2 7b7h:A 370 395 0.9179 0.9973 0.9342 0.0 6szo:A
3 8qcl:A 390 396 0.4428 0.4564 0.4495 7.58e-117 8qcl:B, 8qef:B
4 8tru:A 378 159 0.1443 0.1534 0.3648 1.48e-21
5 8tru:A 378 40 0.0373 0.0397 0.3750 0.006
6 6ru1:B 386 163 0.1493 0.1554 0.3681 8.89e-20 6ru2:A, 6ru2:B, 6rv7:B, 6rv8:B, 6rv8:A, 6rv9:B
7 4g4j:A 369 158 0.1418 0.1545 0.3608 8.73e-18
8 6rax:4 626 85 0.0672 0.0431 0.3176 0.20 6raw:4, 6ray:4, 6raz:4
9 6aid:A 261 43 0.0473 0.0728 0.4419 1.5 3wyn:A, 3wyn:B
10 8erb:K 429 140 0.0846 0.0793 0.2429 1.6 8erb:A, 8erb:C, 8erb:B, 8erb:D, 8erb:G, 8erb:H, 8erb:F, 8erb:P, 8erb:I, 8erb:J, 8erb:M, 8erb:E, 8erb:Q, 8erb:N, 8erb:L, 8erj:A, 8erj:B, 8erj:C, 8erj:D, 8erj:E, 8erj:F, 8erj:H, 8erj:G
11 2wfk:A 255 69 0.0498 0.0784 0.2899 2.4 3frl:A, 3frl:B, 2wfk:B, 2wfk:C, 2wfk:D, 2wfk:E
12 8rd8:MB 119 74 0.0547 0.1849 0.2973 2.7 8rdv:MB, 8rdw:MB
13 6nff:A 794 93 0.0721 0.0365 0.3118 5.6
14 7q54:C 368 35 0.0323 0.0353 0.3714 10.0 2pkq:O, 2pkq:Q, 2pkq:T, 7q53:O, 7q53:Q, 7q54:Q, 7q54:O, 7q54:A, 7q55:O, 7q55:Q, 7q55:A, 7q55:C, 7q55:E, 7q55:G, 7q55:I, 7q55:K, 7q56:K, 7q56:E, 7q56:I, 7q56:A, 7q56:G, 7q56:C, 7q56:Q, 7q56:O, 7q57:O, 7q57:Q, 7q57:A, 7q57:C, 7q57:G, 7q57:E, 7q57:I, 7q57:K, 7q57:M, 7q57:S

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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