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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HRHEPRDHQCSSAVAKHIKAPVHLVWSLVRRFDQPQLFKPFVSRCEMKGNIEIGSVREVNVKSGLPATRSTERLELLDDN
EHILSVRFVGGDHRLKNYSSILTVHPEVIDGRPGTLVIESFVVDVPEGNTKDETCYFVEALLKCNLKSLAEVSERLVV

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5gwo:D 167 158 1.0000 0.9461 1.0000 1.17e-115 5gwo:C, 5gwp:C, 5gwp:D, 5zcg:C, 5zcg:D, 5zch:C, 5zch:D, 5zcl:C, 5zcl:D, 5zcu:C, 5zcu:D
2 3w9r:A 171 156 0.7848 0.7251 0.7949 4.64e-93 3oqu:A, 3oqu:B
3 7mlc:A 156 149 0.6899 0.6987 0.7315 1.06e-82 7mld:A, 6nwb:A, 6nwc:A, 3r6p:A
4 8ay6:A 190 160 0.4810 0.4000 0.4750 5.46e-53 7avw:A, 8ay3:A, 8ay7:A, 8ay8:A, 8ay9:A, 8aya:A, 5mmx:B, 5mmx:A, 5mn0:A, 6zuc:A
5 5mob:A 193 158 0.4873 0.3990 0.4873 1.24e-50 7z1q:A, 7z1r:D000, 7z1s:A
6 3nj1:A 182 154 0.4810 0.4176 0.4935 3.10e-49 5jnn:A, 3kaz:B, 3kb0:A, 3kb3:A, 3kdi:A, 4la7:A, 4lg5:A, 4lga:A, 4lgb:A, 7mwn:A, 3nj0:A, 3nj0:B, 3nj0:C, 3nmh:A, 3nmh:B, 3nmh:C, 3nmp:A, 3nmp:B, 3nmp:C, 3nmt:A, 3nmv:A, 3nr4:A, 3nr4:B, 3nr4:C, 3ns2:A, 3ns2:B, 3ns2:C, 3ujl:A, 5vr7:A, 5vro:A, 5vs5:A, 5vsq:A, 5vsr:A, 5vt7:A
7 3k3k:B 183 159 0.4684 0.4044 0.4654 1.19e-46 8ey0:A, 3k90:A, 3k90:D, 3njo:A, 3njo:B, 3njo:C, 5or2:A, 5or6:A, 3qn1:A, 5ur4:A, 5ur5:A, 5ur6:A, 3wg8:A, 4wvo:A, 5ygv:A, 5ygv:B, 3zvu:A
8 5ujv:A 192 163 0.4557 0.3750 0.4417 6.25e-43 5ujv:B, 5ujv:C
9 3oji:B 185 161 0.4304 0.3676 0.4224 6.50e-42 4ds8:A, 4dsb:A, 4dsb:B, 4dsc:A, 4dsc:B, 4jda:A, 4jda:B, 4jda:C, 4jda:D, 5jo1:A, 5jo2:A, 3oji:A
10 3nef:A 182 158 0.4494 0.3901 0.4494 1.20e-39 9j6i:B, 3jrq:B, 3jrs:A, 3jrs:B, 3jrs:C, 3kdj:A, 3neg:A, 3neg:B, 3nmn:A, 3nmn:C
11 4oic:A 182 147 0.4684 0.4066 0.5034 2.00e-38
12 2ii3:A 234 88 0.1456 0.0983 0.2614 1.4 2ii3:B, 2ii3:C, 2ii3:D, 2ii3:E, 2ii3:F, 2ii3:G, 2ii3:H, 2ii4:A, 2ii4:B, 2ii4:C, 2ii4:D, 2ii4:E, 2ii4:F, 2ii4:G, 2ii4:H, 2ii5:A, 2ii5:B, 2ii5:C, 2ii5:D, 2ii5:E, 2ii5:F, 2ii5:G, 2ii5:H
13 7oik:A 4426 16 0.0633 0.0023 0.6250 2.1 7oim:A, 6tax:A, 6tay:A
14 1arc:A 263 63 0.1139 0.0684 0.2857 2.7
15 5c2i:A 468 41 0.0949 0.0321 0.3659 2.9 5c2i:B, 5c2i:C, 5c2i:D
16 7w6l:C 158 58 0.1076 0.1076 0.2931 3.7 5f59:A, 5f6k:C, 5f6k:E, 6kiw:K, 7w6l:E
17 6sga:FB 377 45 0.0886 0.0371 0.3111 5.7 6sgb:FB
18 5dfa:A 685 42 0.0696 0.0161 0.2619 6.5 5dfa:B, 5dfa:C, 4oif:A, 4oif:B, 4oif:C
19 9ceu:P 607 100 0.1392 0.0362 0.2200 7.2 9cev:P, 9cew:P, 9cex:P, 9cey:P, 9cez:P, 8gkh:P
20 3pa1:A 315 80 0.1456 0.0730 0.2875 8.9 5bsx:A, 5bsy:A, 6gw1:A, 6gw1:B, 6gw2:A, 6gw2:B, 6gy9:A, 6gy9:B, 5hza:A, 5hza:B, 5hzb:B, 5hzb:A, 3ony:A, 3ony:B, 3ony:C, 3pa1:B, 3pa2:A, 3pa2:B, 3q38:A, 3q39:A, 3q39:B, 3q3a:B, 3q3a:A, 3ry8:A, 8y6c:B, 8y6c:A, 8y6d:B, 8y6d:A, 4z4r:A, 4z4r:B, 4z4s:A, 4z4s:B, 4z4t:A, 4z4t:B, 4z4u:A, 4z4u:B, 4z4v:A, 4z4v:B, 4z4w:A, 4z4w:B, 4z4y:A, 4z4z:A, 4z4z:B
21 3tm2:A 367 38 0.0886 0.0381 0.3684 9.4 3tm2:B
22 2b5o:A 292 57 0.1139 0.0616 0.3158 9.6 2b5o:B
23 5dxh:D 981 89 0.1646 0.0265 0.2921 9.8 8gua:A, 6oac:A
24 5swp:A 1060 89 0.1646 0.0245 0.2921 9.8 6gvh:A, 5swt:A, 8v8u:A, 8v8u:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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