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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HQQLRKYVELYNKEVEEFYNGAEFHPSKVHVKSIHEISSVGVDWDSEEKNTFFWCLSRYSIHRVDEWRSLLPRKSAMEIL
GYYRLLRRASASARSRAPIAYEMSAEWVALETKLSETVMAITEGAAEVADEEGHCEGLIDYESWKRRWVAIYSHSRIAEI
RPLPRHALPLSRSATQTLERCVSRYTRTLLWCTALAGMASRSVSARASLPTVVTRRQVERALCTEARSRDLHVLPRRIVL
TLRKWELDYPREGKLFRTKEMAHLFLQSQLSRDEIDEADLFRSALHENQLLKWLSK

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7z0o:D 296 296 1.0000 1.0000 1.0000 0.0
2 4zmt:F 173 52 0.0608 0.1040 0.3462 0.36
3 6ztb:I 217 52 0.0608 0.0829 0.3462 0.49 7cme:A, 7cme:B, 7cmf:A, 8hyi:A, 8hyi:B, 5jym:A, 5jym:C, 4oy9:A, 4zml:A, 4zmn:A, 4zmo:A, 4zmp:A, 4zmq:A, 4zmq:B, 4zmt:A, 4zmt:B, 4zmt:C, 4zmt:D, 4zmt:E, 4zmv:A, 4zmv:B, 4zmw:A, 4zmw:B, 4zmx:A, 4zmx:B, 4zmy:A, 4zmz:A, 6ztr:I, 6ztr:J
4 8tpj:A 210 113 0.0811 0.1143 0.2124 0.82
5 7obq:y 454 48 0.0541 0.0352 0.3333 4.5 6frk:y, 2go5:1, 5l3q:B, 5l3q:D, 6y32:B, 6y32:D, 6y32:F, 6y32:H
6 5ltm:B 537 27 0.0405 0.0223 0.4444 6.6 5ltm:A
7 7aoa:D 343 43 0.0473 0.0408 0.3256 7.3 7ao8:D, 7ao8:A, 7ao9:D, 7ao9:A, 7aoa:A, 5icn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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