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BioLiP
>protein
HPYQNRTPPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3a01:A 78 73 1.0000 0.8718 0.9315 2.38e-43 3a01:E
2 8pna:A 67 57 0.4853 0.4925 0.5789 1.30e-18 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
3 2me6:A 71 57 0.4706 0.4507 0.5614 1.02e-17
4 3rkq:A 58 56 0.4559 0.5345 0.5536 1.30e-15 3rkq:B
5 2r5z:A 75 55 0.4118 0.3733 0.5091 4.99e-15 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
6 4rdu:D 62 55 0.4118 0.4516 0.5091 1.96e-14 4rdu:A, 4xrs:I, 4xrs:G
7 1ig7:A 58 55 0.4118 0.4828 0.5091 2.64e-14
8 1ahd:P 68 60 0.3971 0.3971 0.4500 1.15e-13
9 5flv:M 229 52 0.4412 0.1310 0.5769 2.47e-13 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
10 1b72:A 68 51 0.4118 0.4118 0.5490 3.66e-13
11 2h1k:B 60 55 0.3824 0.4333 0.4727 4.53e-13 2h1k:A
12 1jgg:A 57 55 0.3824 0.4561 0.4727 1.57e-12 1jgg:B
13 1nk2:P 77 59 0.4118 0.3636 0.4746 2.58e-12 1nk3:P
14 4uus:A 67 55 0.3676 0.3731 0.4545 3.48e-12 4uus:E
15 3a01:F 61 55 0.3824 0.4262 0.4727 5.95e-12 3a01:B, 3lnq:A
16 4cyc:A 66 56 0.3676 0.3788 0.4464 1.14e-11 1b8i:A
17 8osb:E 62 54 0.3971 0.4355 0.5000 5.55e-11
18 8eml:A 58 55 0.3529 0.4138 0.4364 6.59e-11 8eml:B
19 5zjr:A 64 51 0.3529 0.3750 0.4706 4.21e-10 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
20 1zq3:P 68 58 0.3676 0.3676 0.4310 7.30e-10
21 3cmy:A 60 56 0.3676 0.4167 0.4464 7.82e-10
22 4rbo:A 55 53 0.3382 0.4182 0.4340 2.25e-09 4rbo:D
23 6es3:K 72 54 0.3676 0.3472 0.4630 2.60e-09 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
24 1puf:A 77 54 0.3676 0.3247 0.4630 3.82e-09 2lp0:A
25 2lkx:A 68 54 0.3382 0.3382 0.4259 4.88e-09
26 1fjl:A 65 56 0.3235 0.3385 0.3929 3.48e-08 1fjl:B, 1fjl:C
27 6m3d:C 108 52 0.2941 0.1852 0.3846 4.35e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
28 6m3d:C 108 48 0.2647 0.1667 0.3750 1.17e-06 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
29 4qtr:C 57 57 0.3088 0.3684 0.3684 5.56e-07 4qtr:A, 4qtr:B, 4qtr:D
30 8ejo:A 56 51 0.2647 0.3214 0.3529 1.67e-06 8ejo:B, 8ejp:A, 8ejp:B
31 2ld5:A 67 51 0.2500 0.2537 0.3333 1.92e-06
32 6e8c:A 135 60 0.3235 0.1630 0.3667 1.33e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
33 6e8c:A 135 52 0.2500 0.1259 0.3269 0.010 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 9b8u:B 66 47 0.2647 0.2727 0.3830 2.70e-05 9b8u:A, 9b8u:C, 9b8u:D
35 5eea:G 63 58 0.2353 0.2540 0.2759 7.78e-05 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
36 1le8:A 53 42 0.2206 0.2830 0.3571 0.004 1akh:A, 1yrn:A
37 1gt0:C 137 59 0.3529 0.1752 0.4068 0.004 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
38 7xrc:C 134 57 0.3088 0.1567 0.3684 0.011 2xsd:C
39 5hod:A 61 57 0.3235 0.3607 0.3860 0.053 5hod:D
40 3d1n:I 150 49 0.2500 0.1133 0.3469 0.10 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
41 5wc9:A 136 43 0.2206 0.1103 0.3488 0.35 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
42 7uci:A 686 53 0.2647 0.0262 0.3396 0.54 7uci:B
43 1lfu:P 82 28 0.1324 0.1098 0.3214 0.62 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
44 1akh:B 78 51 0.2500 0.2179 0.3333 0.65 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
45 7ucl:A 616 53 0.2647 0.0292 0.3396 0.80 7ucl:B
46 1mnm:C 77 51 0.2500 0.2208 0.3333 0.86 1mnm:D
47 4egc:A 539 50 0.2353 0.0297 0.3200 1.9
48 2gh9:A 378 37 0.2059 0.0370 0.3784 2.6
49 4wqs:D 1151 56 0.1912 0.0113 0.2321 4.6
50 4j19:A 77 61 0.2500 0.2208 0.2787 6.9 4j19:B
51 8yik:A 379 47 0.1765 0.0317 0.2553 7.5
52 4v6w:AH 194 38 0.1912 0.0670 0.3421 8.1 6xu6:AH, 6xu7:AH, 6xu8:AH
53 7pci:A 345 25 0.1765 0.0348 0.4800 8.4 7pcc:A, 7pcc:B, 7pce:A, 7pcg:A, 7pcg:B, 7pcl:A, 7pcl:B, 7pcm:A, 7pcm:B, 7pcn:A, 7pcn:B, 7pco:A, 7pco:B, 7pct:A, 7pct:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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