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BioLiP
>protein
HPGLVPRDKLKLHCEFCRFHWVQDTLVVRCAAHPKEHNQREIWLEPTWTWGKQQ

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aih:W 54 54 1.0000 1.0000 1.0000 3.51e-36 7ane:W
2 6hiv:A9 53 51 0.5926 0.6038 0.6275 6.20e-19 6hix:A9
3 4v61:B6 38 35 0.2407 0.3421 0.3714 0.20 6xyw:AE
4 7nhk:8 38 35 0.2407 0.3421 0.3714 1.9 5myj:B8, 6o8w:6, 6o8x:6, 6o8y:6, 6o8z:6, 6o90:6, 7p7q:8, 7p7r:8, 7p7s:8, 7p7t:8, 7p7u:8, 6w6p:6, 6wu9:6
5 6v7z:F 117 45 0.2407 0.1111 0.2889 2.6
6 7r89:B 529 14 0.1481 0.0151 0.5714 4.1
7 7r8b:B 564 14 0.1481 0.0142 0.5714 4.2
8 7bzc:A 535 14 0.1296 0.0131 0.5000 4.5 7bzb:A
9 3hqi:A 294 24 0.2222 0.0408 0.5000 4.6 7d3d:A, 7d3d:B, 6f8f:D, 6f8g:A, 6f8g:C, 6f8g:D, 6f8g:B, 3hqh:A, 3hqi:B, 3hql:A, 3hql:B, 3hqm:A, 3hqm:B, 3hsv:A, 3hsv:B, 3hu6:A, 3hu6:B, 6i41:A, 6i5p:A, 6i5p:C, 6i5p:E, 6i5p:G, 6i68:A, 6i68:C, 6i68:E, 6i68:G, 6i7a:A, 6i7a:C, 6i7a:E, 6i7a:G, 3ivb:A, 3ivq:A, 3ivq:B, 3ivv:A, 7klz:A, 7klz:B, 7kpk:A, 7lin:A, 7lio:A, 7lio:B, 4o1v:A
10 4x8r:A 304 23 0.1852 0.0329 0.4348 7.8 4x8r:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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