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BioLiP
>protein
HPCFNEKLHDRVGRVHVPIAPRCNIHCKFCTRDINECERRPGVTGRLMTADDAIKHVEKVKEEMPISVIGVAGPGDALAN
EETFEFFKKASKKFPDLLKCMSTNGLLLPDRADELAELGINTVTVTVNAVDPEIGEKIYSFVVYKDKVYHGREAFEVLSR
NQLEGIEKLAERGIIVKVNSVLIPGLNDEHIVDIAREVKKRGASLMNIIPLIPMGEMKDYPRPTCEQIERVRNEVEKIIP
VFRACTQCRADAYGIPGKKEAD

The query sequence (length=262) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7bi7:A 279 262 1.0000 0.9391 1.0000 0.0 7bi7:B, 7jmb:A, 7jmb:B
2 6y1x:A 252 246 0.4695 0.4881 0.5000 2.74e-83 6y1x:B
3 2fb2:A 327 194 0.1756 0.1407 0.2371 1.16e-07 2fb2:B, 2fb3:A, 2fb3:B, 1tv7:A, 1tv7:B, 1tv8:A, 1tv8:B
4 2a5h:B 410 182 0.1565 0.1000 0.2253 0.002 2a5h:A, 2a5h:D, 2a5h:C
5 7vob:C 327 110 0.0954 0.0765 0.2273 0.072 7voc:C
6 4eqb:A 323 45 0.0573 0.0464 0.3333 0.097 4eqb:B
7 6u5w:A 1435 165 0.1641 0.0300 0.2606 0.18
8 1lkx:C 679 141 0.1260 0.0486 0.2340 0.58 1lkx:A, 1lkx:B, 1lkx:D
9 6z1p:Bo 179 99 0.0954 0.1397 0.2525 1.6
10 7y9g:B 311 26 0.0382 0.0322 0.3846 2.0
11 7y9g:A 344 26 0.0382 0.0291 0.3846 2.1
12 8vpo:A 448 215 0.1832 0.1071 0.2233 2.2
13 4la6:A 325 50 0.0534 0.0431 0.2800 2.8 3v1v:A, 3v1x:A
14 7qbu:A 418 109 0.1069 0.0670 0.2569 3.7 7qbs:A, 7qbt:A, 7qbt:B, 7qbt:C, 7qbt:D, 7qbu:B, 7qbv:A, 7qbv:B, 7qbv:C, 7qbv:D
15 8ihq:A 399 63 0.0534 0.0351 0.2222 5.1 8ihq:B, 8ihq:C, 8ihq:D, 8ihq:E, 8ihq:F, 8ihq:G, 8ihq:H, 8ihr:A, 8ihr:B, 8ihr:C, 8ihr:D, 8ihr:E, 8ihr:F, 8ihr:G, 8ihr:H, 8ihs:A, 8ihs:B, 8ihs:C, 8ihs:D, 8ihs:E, 8ihs:F, 8ihs:G, 8ihs:H, 8j85:A, 8j85:B, 8j85:C, 8j85:D, 8j85:E, 8j85:F, 8j85:G, 8j85:H
16 7tom:A 498 186 0.1565 0.0823 0.2204 5.5 7tol:A
17 8ozh:C 405 42 0.0382 0.0247 0.2381 6.3 8ozh:G, 8ozh:K, 8ozj:G, 8ozj:K, 8ozp:G, 8ozq:G
18 6kut:A 688 127 0.1221 0.0465 0.2520 6.7 6kuj:A, 6kuk:A, 6kup:A, 6kur:A, 6kuu:A, 6kuv:A
19 5g0f:A 110 32 0.0458 0.1091 0.3750 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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