Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HNLPVIGGIAIPDVEINLPIFKGLGNTELSYGAGTMKENQIMGGPNNYALASHHVFLFSPLEHAKKGMKVYLTDSKVYTY
TITEISKVTPEHVEVIDDTPGKSQLTLVTCTDRIIVHAELEKTGEFSTA

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rcc:N 137 135 1.0000 0.9416 0.9556 8.94e-89 3rcc:A, 3rcc:B, 3rcc:C, 3rcc:D, 3rcc:E, 3rcc:F, 3rcc:G, 3rcc:H, 3rcc:I, 3rcc:J, 3rcc:K, 3rcc:L, 3rcc:M, 3rcc:R, 3rcc:O, 3rcc:P, 3rcc:Q
2 7s4o:A 170 143 0.6667 0.5059 0.6014 7.84e-54 7s4o:B, 7s51:A, 7s51:B, 7t8y:A, 7t8z:A, 8t8g:A, 7v6k:A, 7v6k:B
3 7f87:A 145 132 0.5039 0.4483 0.4924 3.33e-30 7f87:B
4 2rui:A 158 127 0.4264 0.3481 0.4331 7.03e-25
5 2xwg:B 185 129 0.3023 0.2108 0.3023 9.95e-13 2xwg:A, 2xwg:C
6 2kid:A 148 116 0.3256 0.2838 0.3621 2.11e-12 2mlm:A, 6r1v:A, 1t2w:A
7 4g1h:A 176 127 0.3023 0.2216 0.3071 5.72e-11
8 5go5:A 152 121 0.3411 0.2895 0.3636 2.91e-09
9 2wts:A 197 117 0.2481 0.1624 0.2735 1.76e-07
10 3tbe:A 194 118 0.2403 0.1598 0.2627 1.68e-06 3tbe:B, 3tbe:C, 3tbe:D, 3tbe:E
11 6fv4:B 385 97 0.2016 0.0675 0.2680 0.11 6fv3:A, 6fv3:B, 6fv3:C, 6fv4:A
12 6fv3:D 350 96 0.2016 0.0743 0.2708 0.13
13 4ubf:A 309 59 0.1628 0.0680 0.3559 0.36
14 4qat:B 189 45 0.1473 0.1005 0.4222 3.4 4qar:B
15 8uat:F 351 42 0.1163 0.0427 0.3571 4.4 3hf3:A, 3hf3:B, 3hf3:C, 3hf3:D, 3hgj:A, 3hgj:B, 3hgj:C, 3hgj:D, 5nux:A, 5nux:B, 5nux:C, 5nux:D, 5ogt:A, 5ogt:B, 5ogt:C, 5ogt:D, 8uaj:A, 8uaj:B, 8uaj:C, 8uaj:D, 8uat:B, 8uat:C, 8uat:D, 8uat:E, 8uat:G, 8uat:H, 8uat:A
16 1ft1:B 416 30 0.0775 0.0240 0.3333 7.3 2bed:B, 1d8d:B, 1d8e:B, 3dpy:B, 3e30:B, 3e32:B, 3e33:B, 3e34:B, 3e37:B, 8e9e:B, 3eu5:B, 3euv:B, 2f0y:B, 1fpp:B, 1ft2:B, 4gtm:B, 4gto:B, 4gtp:B, 4gtq:B, 4gtr:B, 2h6f:B, 2h6g:B, 2h6h:B, 2h6i:B, 2iej:B, 1jcq:B, 1jcr:B, 1jcs:B, 3ksl:B, 3ksq:B, 1kzo:B, 1kzp:B, 1ld7:B, 1ld8:B, 1mzc:B, 1n94:B, 1n95:B, 1n9a:B, 1ni1:B, 1nl4:B, 1o1r:B, 1o1s:B, 1o1t:B, 1o5m:B, 3pz4:B, 1qbq:B, 2r2l:B, 7rn5:B, 7rni:B, 1s63:B, 1sa4:B, 1sa5:B, 1tn6:B, 1tn7:B, 1tn8:B, 1x81:B, 2zir:B, 2zis:B
17 1qz9:A 404 28 0.0853 0.0272 0.3929 8.8

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218