Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HNLPVIGGIAIPDVEINLPIFKGLGNTELSYGAGTMKENQIMGGPNNYALASHHVFLFSPLEHAKKGMKVYLTDKSKVYT
YTITEISKVTPEHVEVIDDTPGKSQLTLVTCTDPEATERIIVHAELEKT

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rcc:N 137 129 1.0000 0.9416 1.0000 7.94e-93 3rcc:A, 3rcc:B, 3rcc:C, 3rcc:D, 3rcc:E, 3rcc:F, 3rcc:G, 3rcc:H, 3rcc:I, 3rcc:J, 3rcc:K, 3rcc:L, 3rcc:M, 3rcc:R, 3rcc:O, 3rcc:P, 3rcc:Q
2 7s4o:A 170 135 0.6899 0.5235 0.6593 2.65e-60 7s4o:B, 7s51:A, 7s51:B, 7t8y:A, 7t8z:A, 8t8g:A, 7v6k:A, 7v6k:B
3 7f87:A 145 132 0.5116 0.4552 0.5000 8.11e-33 7f87:B
4 2rui:A 158 127 0.4264 0.3481 0.4331 4.24e-27
5 2xwg:B 185 115 0.2713 0.1892 0.3043 9.10e-14 2xwg:A, 2xwg:C
6 2kid:A 148 116 0.3256 0.2838 0.3621 1.90e-13 2mlm:A, 6r1v:A, 1t2w:A
7 4g1h:A 176 113 0.2636 0.1932 0.3009 1.38e-11
8 5go5:A 152 124 0.3488 0.2961 0.3629 2.12e-11
9 2wts:A 197 113 0.2326 0.1523 0.2655 1.47e-08
10 3tbe:A 194 113 0.2248 0.1495 0.2566 1.08e-07 3tbe:B, 3tbe:C, 3tbe:D, 3tbe:E
11 6fv4:B 385 97 0.1938 0.0649 0.2577 0.019 6fv3:A, 6fv3:B, 6fv3:C, 6fv4:A
12 6fv3:D 350 96 0.1938 0.0714 0.2604 0.020
13 4ubf:A 309 54 0.1550 0.0647 0.3704 1.0
14 5n6n:C 698 35 0.0853 0.0158 0.3143 2.1 5m4a:A
15 8dfv:A 1664 77 0.1628 0.0126 0.2727 2.5
16 8dg5:A 1635 77 0.1628 0.0128 0.2727 2.7 8dg7:A
17 6ywe:a 161 64 0.1628 0.1304 0.3281 3.5 6yws:a, 6ywv:a, 6ywx:a, 6ywy:a
18 4ccz:A 611 130 0.2636 0.0556 0.2615 5.1
19 7ye1:D 1144 45 0.1163 0.0131 0.3333 5.3 7ye2:D
20 1ft1:B 416 30 0.0775 0.0240 0.3333 7.4 2bed:B, 1d8d:B, 1d8e:B, 3dpy:B, 3e30:B, 3e32:B, 3e33:B, 3e34:B, 3e37:B, 8e9e:B, 3eu5:B, 3euv:B, 2f0y:B, 1fpp:B, 1ft2:B, 4gtm:B, 4gto:B, 4gtp:B, 4gtq:B, 4gtr:B, 2h6f:B, 2h6g:B, 2h6h:B, 2h6i:B, 2iej:B, 1jcq:B, 1jcr:B, 1jcs:B, 3ksl:B, 3ksq:B, 1kzo:B, 1kzp:B, 1ld7:B, 1ld8:B, 1mzc:B, 1n94:B, 1n95:B, 1n9a:B, 1ni1:B, 1nl4:B, 1o1r:B, 1o1s:B, 1o1t:B, 1o5m:B, 3pz4:B, 1qbq:B, 2r2l:B, 7rn5:B, 7rni:B, 1s63:B, 1sa4:B, 1sa5:B, 1tn6:B, 1tn7:B, 1tn8:B, 1x81:B, 2zir:B, 2zis:B
21 8jxc:A 1337 64 0.1473 0.0142 0.2969 8.0 2i1p:A, 8jxb:B, 8jxh:B, 8jxi:A
22 7qep:N8 146 60 0.1318 0.1164 0.2833 8.8
23 1qz9:A 404 20 0.0775 0.0248 0.5000 9.2
24 4qat:B 189 17 0.0775 0.0529 0.5882 9.4 4qar:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218