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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMVKTVYYTASSLDGYIVDENQSLDWLTSRDITPDGPFGYEQFIETIGVLVMGASTYEWVVEHGDWSYDQPAWVLTHRPE
IAAESHPMQVFSGDVAELHPELVAAAGGKDVWVVGGGDVAAQFVAADLIDEIIVSYAPCTLGVGSRVLPMRSEWVLDDCA
RNGDFVCARWKRPV

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2xw7:A 175 174 1.0000 0.9943 1.0000 1.73e-128 2xw7:B
2 7xh4:A 177 152 0.3333 0.3277 0.3816 9.71e-30 7xh2:A
3 1d1g:A 164 141 0.2126 0.2256 0.2624 8.36e-07 1d1g:B
4 3kgy:A 218 111 0.1839 0.1468 0.2883 2.86e-04 3kgy:B
5 8dqb:A 370 40 0.0920 0.0432 0.4000 0.11 8dq9:A, 8dq9:B, 8dqc:A, 8dqc:B
6 2o7p:A 358 40 0.0920 0.0447 0.4000 0.14 2o7p:B, 2obc:A
7 8jsv:I 203 41 0.0805 0.0690 0.3415 0.19 8jsv:A, 8jsv:B, 8jsv:C, 8jsv:D, 8jsv:E, 8jsv:F, 8jsv:G, 8jsv:H, 8jsv:J, 8jsy:A, 8jsy:B, 8jsy:C, 8jsy:D, 8jsy:E, 8jsy:F, 8jsy:G, 8jsy:H, 8jsy:I, 8jsy:J, 8jt0:A, 8jt0:B, 8jt0:C, 8jt0:D, 8jt0:E, 8jt0:F, 8jt0:G, 8jt0:H, 8jt0:I, 8jt0:J
8 4g3m:A 361 170 0.2184 0.1053 0.2235 0.35 2b3z:A, 2b3z:B, 2b3z:C, 2b3z:D, 2d5n:A, 2d5n:B, 2d5n:C, 2d5n:D, 3ex8:A, 3ex8:B, 3ex8:C, 3ex8:D, 4g3m:B, 4g3m:C, 4g3m:D
9 2a8j:B 313 58 0.1149 0.0639 0.3448 1.1 2a8j:A, 2a8m:A
10 5uxm:A 445 60 0.1092 0.0427 0.3167 2.1 5uxn:A, 5uxo:A
11 7mfm:I 490 23 0.0805 0.0286 0.6087 2.7 7mfm:J, 7mft:I
12 6w4q:D 755 58 0.1034 0.0238 0.3103 3.2 5w6p:A, 5w6p:B, 5w6p:C, 5w6p:D, 5w6p:E, 5w6p:F, 5w6s:A
13 3uib:A 309 48 0.0805 0.0453 0.2917 4.1
14 4r5o:A 426 68 0.1092 0.0446 0.2794 4.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218