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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMVKKRVLLWDYTNTRDVKWAMDKINFKGPLHSCSNWNTWYPDELKHRLPFRPMIHGKNNLTGGEWQNILKTNEEVIHFF
NEPERAGISPEEAAKIWNDQVLALRTSHHKRLVSPSCASDPAGIAWIKKWMNLVAKNPPDYLGLHWYGTKGDEMIRYLES
MHKEHPHQPIIVSEWASTSRSYPDVLGLTVQLANWMDSTPWVAEYALFGCMRQMADDFVSPEAQLMNKDGSFTDLMWKYM
SDQPMHI

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ubb:C 249 247 1.0000 0.9920 1.0000 0.0 6uba:A, 6uba:B, 6uba:C, 6uba:D, 6uba:E, 6uba:F, 6uba:G, 6uba:H, 6uba:I, 6uba:J, 6ubb:A, 6ubb:B, 6ubb:D, 6ubb:E, 6ubb:F, 6ubb:G, 6ubb:H, 6ubb:I, 6ubb:J
2 6ub6:A 252 104 0.1417 0.1389 0.3365 4.75e-10 6ub3:A, 6ub3:B, 6ub4:A, 6ub4:B, 6ub5:A
3 6uaz:B 232 195 0.2024 0.2155 0.2564 1.88e-07 6uaz:A, 6ub0:A, 6ub1:A, 6ub1:C, 6ub1:D, 6ub1:B
4 6uar:A 241 159 0.1984 0.2033 0.3082 2.64e-07 6uas:A, 6uat:A, 6uau:A, 6ufl:A
5 5ahj:I 204 89 0.1053 0.1275 0.2921 0.014 3bdm:I, 5bou:I, 5bou:W, 5bxl:I, 5bxl:W, 5bxn:I, 5cgf:I, 5cgf:W, 5cgg:I, 5cgh:I, 5cgi:I, 5cgi:W, 5cz4:I, 5cz4:W, 5cz5:I, 5cz6:I, 5cz6:W, 5cz7:I, 5cz8:I, 5cz8:W, 5cz9:I, 5cza:I, 5cza:W, 5d0s:I, 5d0t:I, 5d0v:I, 5d0v:W, 5d0w:I, 5d0z:I, 3d29:I, 3d29:W, 5dki:I, 5dkj:I, 2f16:I, 2f16:W, 5fg7:I, 5fg7:W, 5fg9:I, 5fga:W, 5fgd:W, 5fge:I, 5fgf:I, 5fgf:W, 5fgg:W, 5fgi:I, 5fhs:I, 5fhs:W, 1fnt:J, 1fnt:X, 9fst:I, 9fst:W, 9fsv:I, 9fsv:W, 9ft0:I, 9ft1:I, 9ft1:W, 4fzc:I, 4fzc:W, 4fzg:I, 4fzg:W, 1g0u:I, 1g0u:W, 4g4s:J, 1g65:I, 6g7f:W, 6g8m:I, 6g8m:W, 4gk7:I, 4gk7:W, 2gpl:I, 2gpl:W, 3gpj:I, 3gpj:W, 6h39:I, 4hrc:W, 4hrd:I, 6htb:I, 6htb:W, 6htc:I, 6htc:W, 6htd:I, 6htd:W, 6htp:I, 6htp:W, 6hub:I, 6huc:I, 6huc:W, 6huq:I, 6huq:W, 6huu:I, 6huu:W, 6hv3:I, 6hv3:W, 6hv4:I, 6hv5:I, 6hv5:W, 6hv7:I, 6hv7:W, 6hva:I, 6hvr:I, 6hvr:W, 6hvs:I, 6hvs:W, 6hvt:I, 6hvt:W, 6hvu:I, 6hvu:W, 6hvv:I, 6hvv:W, 6hvw:I, 6hvw:W, 6hvx:I, 6hvy:I, 6hvy:W, 6hw0:I, 6hw0:W, 6hw3:I, 6hw3:W, 6hw4:I, 6hw4:W, 6hw5:I, 6hw5:W, 6hw6:I, 6hw6:W, 6hw7:I, 6hw7:W, 6hw8:I, 6hwa:I, 6hwb:I, 6hwc:W, 6hwd:I, 6hwd:W, 6hwe:I, 6hwe:W, 6hwf:I, 6hwf:W, 4inr:I, 4inr:W, 4int:I, 4int:W, 4inu:I, 4inu:W, 1jd2:I, 1jd2:P, 5jhr:I, 5jhs:I, 4jsu:I, 4jsu:W, 5l52:I, 5l54:I, 5l5a:I, 5l5b:I, 5l5d:I, 5l5e:I, 5l5e:W, 5l5f:I, 5l5f:W, 5l5h:I, 5l5i:I, 5l5j:I, 5l5j:W, 5l5o:I, 5l5p:I, 5l5p:W, 5l5q:I, 5l5s:I, 5l5t:I, 5l5u:I, 5l5v:I, 5l5w:I, 5l5x:I, 5l5y:I, 5l5y:W, 5l5z:I, 5l60:I, 5l61:I, 5l62:I, 5l63:I, 5l63:W, 5l65:I, 5l66:I, 5l67:I, 5l68:I, 5l68:W, 5l69:I, 5l6a:I, 5l6b:I, 5l6b:W, 5l6c:I, 5lai:I, 5laj:I, 5ltt:I, 3mg0:I, 3mg4:I, 3mg6:I, 3mg7:I, 3mg8:I, 4nnn:I, 4nnw:I, 4no1:I, 4no6:I, 4no8:I, 7o2l:W, 3oeu:I, 3oev:I, 8ohz:I, 8ohz:W, 8oi1:W, 8olr:I, 8olr:W, 4qby:I, 4qlq:I, 4qls:I, 4qlt:I, 4qlv:I, 4quy:I, 4qv1:I, 4qv6:I, 4qv7:I, 4qv8:I, 4qv9:I, 4qvl:I, 4qvl:W, 4qvm:I, 4qvm:W, 4qvn:I, 4qvp:I, 4qvp:W, 4qvq:I, 4qvv:I, 4qvw:I, 4qvy:I, 4qvy:W, 4qw0:I, 4qw0:W, 4qw1:I, 4qw1:W, 4qw4:I, 4qw4:W, 4qw6:I, 4qw7:I, 4qwf:I, 4qwg:I, 4qwg:W, 4qwi:I, 4qwi:W, 4qwj:I, 4qwj:W, 4qwk:I, 4qwk:W, 4qwl:I, 4qwl:W, 4qwr:I, 4qwr:W, 4qws:I, 4qwx:I, 4qxj:I, 4qz2:I, 4qz3:I, 4qz5:I, 4qz5:W, 4qz7:I, 4qzw:I, 4qzx:I, 4r02:I, 4r17:I, 4r18:I, 8rhk:I, 8rhk:W, 8rhl:I, 4rur:I, 4rur:W, 1ryp:J, 1ryp:X, 3sdi:I, 3sdi:W, 3sdk:I, 3un4:I, 3un4:W, 4y69:I, 4y6a:I, 4y6z:I, 4y70:I, 4y74:I, 4y75:I, 4y77:I, 4y78:I, 4y7w:I, 4y7x:I, 4y7y:I, 4y80:I, 4y81:I, 4y82:I, 4y84:I, 4y8g:I, 4y8h:I, 4y8i:I, 4y8j:I, 4y8k:I, 4y8l:I, 4y8m:I, 4y8m:W, 4y8o:I, 4y8p:I, 4y8q:I, 4y8r:I, 4y8r:W, 4y8s:I, 4y9y:I, 4y9y:W, 4ya0:I, 4ya1:I, 4ya1:W, 4ya2:I, 4ya4:I, 4ya4:W, 4ya7:I, 4ya9:I, 4ya9:W, 4z1l:I, 4z1l:W, 2zcy:I, 2zcy:W, 6zou:I, 6zou:W, 6zp6:I, 6zp6:W, 6zp8:I, 6zp8:W
6 6uaw:A 260 150 0.1498 0.1423 0.2467 0.11
7 6d50:B 840 34 0.0526 0.0155 0.3824 0.22 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
8 5z1a:A 655 104 0.1093 0.0412 0.2596 0.28
9 6bq1:E 1510 130 0.1377 0.0225 0.2615 5.7 6bq1:A
10 5foo:A 463 68 0.0729 0.0389 0.2647 5.8 5foo:B, 5foo:C, 5foo:D, 5foo:E, 5foo:F
11 3szm:C 191 42 0.0445 0.0576 0.2619 5.8 3shv:A, 3shv:B, 3szm:A, 3szm:B, 3szm:D, 3szm:E, 3szm:F, 3szm:G, 3szm:H, 3t1n:A, 3t1n:B, 3u3z:A
12 6ys5:t 83 38 0.0405 0.1205 0.2632 6.2 7m4u:s, 7m4w:s, 7m4x:s, 7m4y:s, 7m4z:s, 7ryf:s, 7ryg:s, 7ryh:s, 7uvv:s, 7uvw:s, 7uvx:s, 7uvy:s, 7uvz:s, 7uw1:s, 6v39:s, 6v3a:s, 6v3b:s, 6v3e:s, 6ytf:t
13 7z4a:N 228 57 0.0688 0.0746 0.2982 6.6 7z4a:A
14 6mfz:A 1789 33 0.0526 0.0073 0.3939 8.0 5es7:A, 5es8:A, 5es8:B, 5es9:A, 6mfw:A, 6mfx:A, 6mfy:A, 6mg0:A, 6ulz:A
15 6mg0:B 1687 33 0.0526 0.0077 0.3939 8.0
16 8duj:G 3933 50 0.0648 0.0041 0.3200 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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