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BioLiP
>protein
HMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQ
IGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA

The query sequence (length=121) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6bjv:A 148 122 0.9008 0.7365 0.8934 1.19e-80 6bjg:A, 6bjg:B, 6bjh:A, 6bjh:B, 6bjv:B, 4j39:A, 4j5v:A, 4jgn:A, 4jk0:D, 4jnx:A, 4jnx:D, 4knq:A, 4kq0:A, 4kq0:D, 4ktg:A, 1r9f:A, 1rpu:A, 1rpu:B
2 6gdr:A 256 64 0.1488 0.0703 0.2812 2.8
3 5ta1:A 627 44 0.1157 0.0223 0.3182 3.3 5ta0:A, 5ta0:B, 5ta5:A, 5ta5:B
4 1e5q:A 449 13 0.0744 0.0200 0.6923 3.8 1e5q:B, 1e5q:C, 1e5q:D, 1e5q:E, 1e5q:F, 1e5q:G, 1e5q:H
5 8u6b:A 532 30 0.0909 0.0207 0.3667 5.1 6bsg:B, 6bsh:B, 6bsj:B, 1hvu:B, 1hvu:E, 1hvu:H, 1hvu:K, 5j2p:B, 7so3:B, 8u6d:A, 8u6k:B
6 3afg:B 507 36 0.0826 0.0197 0.2778 5.6 3afg:A
7 6hnd:B 470 31 0.0909 0.0234 0.3548 7.8 6hnd:A, 6hnv:A, 6hnv:B
8 3qde:A 811 37 0.0826 0.0123 0.2703 7.9 8ho8:A, 8ho8:B, 3qde:B
9 6oay:F 558 26 0.0992 0.0215 0.4615 8.6 6og2:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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