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BioLiP
>protein
HMSVEIDWDNIRGDLSVNQGVKDFLNSRLQEFELPSYVNNLKVTNFDLGTMPPNVILKQMDDPLDEFYSNTDVQLLVELD
YKGDMSIELSADLVLNYPSPQFMILPVKLRISDIGMHCLCLLAYLKKQLFISFLCDVSDPLLDKLQVDPSGPNFMGKRAL
ERISLIRNIKIHTELGGSVLRSVGKLEEFLVDLFRNLIRKEAAWPSWIDLD

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5h5a:A 214 215 0.9905 0.9766 0.9721 3.63e-147 5h5a:B, 5h5a:C, 5h5a:D
2 5yk6:A 239 144 0.1469 0.1297 0.2153 2.96e-05 5yk7:C
3 5aa0:BZ 605 62 0.0900 0.0314 0.3065 0.76 5a9z:CA, 4zck:A, 4zcl:A, 4zcl:B, 4zcm:A, 4zcm:B
4 5a9y:A 562 62 0.0900 0.0338 0.3065 0.94 5a9x:A
5 4ay8:A 340 93 0.1517 0.0941 0.3441 2.1 4ay7:A, 4ay7:B, 4ay8:B
6 2bue:A 179 42 0.0664 0.0782 0.3333 3.2 2prb:A, 2qir:A, 1v0c:A, 2vqy:A
7 8y7g:B 543 112 0.1374 0.0534 0.2589 3.5 8y7g:A
8 5o6c:A 252 30 0.0474 0.0397 0.3333 5.7 6t7f:A
9 7e24:D 251 35 0.0711 0.0598 0.4286 6.2 7e24:A, 7e24:B, 7e24:C, 7e3x:A, 7e3x:B
10 6yxy:Bi 192 35 0.0616 0.0677 0.3714 9.4 7aoi:XS

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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