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BioLiP
>protein
HMRRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRE

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6od3:A 62 61 1.0000 0.9839 1.0000 8.70e-39 6od3:B, 6od3:H, 6od3:E, 6od3:F, 6od4:A, 6od4:B, 6od5:A, 6od5:B, 6od5:C, 6od5:D, 8osb:A
2 2ypb:B 74 59 0.8361 0.6892 0.8644 3.51e-31 2ql2:A, 2ql2:C, 2ypa:B
3 2ypa:A 67 51 0.3279 0.2985 0.3922 4.35e-04 2ypb:A
4 7z5i:A 56 55 0.3279 0.3571 0.3636 0.006 7z5i:B, 7z5k:A, 7z5k:B
5 2ql2:B 59 59 0.3443 0.3559 0.3559 0.021 2ql2:D
6 1mdy:A 68 59 0.3443 0.3088 0.3559 0.067 1mdy:B, 1mdy:C, 1mdy:D
7 8osb:B 66 37 0.2459 0.2273 0.4054 0.088
8 1q3i:A 192 40 0.1967 0.0625 0.3000 0.30
9 4ho9:A 294 26 0.1475 0.0306 0.3462 3.7 4ho3:A, 4ho4:A, 4ho5:A, 4ho5:B, 4ho6:A, 4ho8:A, 4ho8:B, 4ho8:C, 4ho8:D, 4ho9:B, 4hoc:A, 4hoc:B
10 4bqk:A 424 38 0.2295 0.0330 0.3684 4.5 4b8o:A, 4b8p:A, 4b8p:B, 4bpl:A, 4bqk:B, 2yns:A, 2yns:B
11 4hj6:B 178 45 0.2295 0.0787 0.3111 6.3 4hia:A, 4hia:B, 4hj3:A, 4hj3:B, 4hj4:A, 4hj4:B, 4hj6:A, 4hnb:A, 4hnb:B, 7ob0:A, 7ob0:B, 7ob0:C, 7ob0:D, 7obz:A, 7obz:B, 7obz:C, 7obz:D, 7obz:E, 7obz:F
12 7zap:A 97 26 0.1475 0.0928 0.3462 6.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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