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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMQKVEVFRIPTASPDDISGLATLIDSGKINPAEIVAILGKTEGNGCVNDFTRGFATQSLAMYLAEKLGISREEVVKKVA
FIMSGGTEGVMTPHITVFVRKDVAAPAAPGKRLAVGVAFTRDFLPEELGRMEQVNEVARAVKEAMKDAQIDDPRDVHFVQ
IKCPLLTAERIEDAKRRGKDVVVNDTYKSMAYSRGASALGVALALGEISADKISNEAICHDWNLYSSVASTSAGVELLND
EIIVVGNSTNSASDLVIGHSVMKDAIDADAVRAALKDAGIRSDDEMDRIVNVLAKAEAASSGTVRGRRNTMLDDSDINHT
RSARAVVNAVIASVVGDPMVYVSGGAEHQGPDGGGPIAVIARV

The query sequence (length=363) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6bum:B 363 363 1.0000 1.0000 1.0000 0.0 6bum:A, 6bum:C, 6bum:D, 6bun:A, 6bun:B, 6bun:C, 6bun:D, 6buo:A, 6buo:D, 6buo:B, 6buo:C, 6bup:A, 6bup:B, 6bup:C, 6bup:D, 6buq:A, 6buq:D, 6buq:B, 6buq:C, 6bur:A, 6bur:B, 6bur:C, 6bur:D, 6cwj:A, 6cwj:B, 6cwj:C, 6cwj:D
2 5t13:A 376 367 0.6501 0.6277 0.6431 1.07e-167
3 4bvq:A 364 365 0.6116 0.6099 0.6082 7.52e-150 4bvq:B, 4bvr:A, 4bvr:B, 4bvs:A, 4bvs:B, 4bvt:A, 4bvt:B
4 4nq3:A 351 360 0.5592 0.5783 0.5639 2.25e-125 4nq3:B
5 5hwe:A 370 370 0.4959 0.4865 0.4865 2.11e-106 5hxu:A, 5hxu:B, 5hxz:A, 5hxz:D, 5hy1:A
6 7vw6:A 913 91 0.0689 0.0274 0.2747 0.90 7e5z:A, 8j83:A, 7xqw:A
7 6hiv:AP 352 32 0.0331 0.0341 0.3750 2.3 7aoi:AP, 6hix:AP, 6yxx:AP, 6yxy:AP
8 4un1:B 159 46 0.0358 0.0818 0.2826 3.6 4un1:D
9 8w6z:A 396 84 0.0689 0.0631 0.2976 4.4 8w72:A
10 6e36:A 395 57 0.0441 0.0405 0.2807 5.9 6e36:B
11 9bul:A 168 52 0.0523 0.1131 0.3654 5.9
12 8rw1:j 267 38 0.0331 0.0449 0.3158 6.3 8cas:j, 6fyx:j, 6fyy:j, 6gsm:j, 6gsn:j, 3j81:j, 3jap:j, 8s8d:j, 8s8e:j, 8s8f:j, 8s8g:j, 8s8h:j, 8s8i:j, 8s8j:j
13 2fz5:A 137 99 0.0661 0.1752 0.2424 6.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218