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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMPVIRDFQPADIETITAIYTQAVLTGTGSYEIEPPTMDEMAKRFAAFADQGFPILVAEADGRVLGYAYASYFRVRPAYR
WLAEDSIYIAPDAKGQGIGKLLLRELIARISALGFRQLLAVIGDGEHNIGSVKLHESLGFTHCGRIEGSGFKHGRWLDTV
LMQLPLNGGRSTEPGPSPLS

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5dwn:A 181 180 1.0000 0.9945 1.0000 7.21e-133 5dwn:B, 5dwn:C, 5dwn:D
2 4jxr:B 185 172 0.5111 0.4973 0.5349 1.32e-58
3 4mbu:A 165 163 0.3444 0.3758 0.3804 5.94e-32 4mbu:B
4 2jlm:F 180 153 0.3222 0.3222 0.3791 3.61e-30
5 2j8m:A 171 169 0.3889 0.4094 0.4142 7.83e-30 2bl1:A, 2j8m:B, 2j8r:A, 2j8r:B
6 5t7e:D 175 160 0.3222 0.3314 0.3625 1.73e-29 5t7d:A, 5t7d:B, 5t7d:C, 5t7d:D, 5t7e:A, 5t7e:B, 5t7e:C
7 5wph:A 179 155 0.3500 0.3520 0.4065 3.09e-28 6m7g:A, 6m7g:C, 6m7g:B, 6m7g:D, 6m7g:E, 6m7g:F, 6m7g:L, 5wph:B
8 4jwp:A 165 163 0.3500 0.3818 0.3865 5.37e-27
9 3dr8:A 173 164 0.3278 0.3410 0.3598 2.04e-26 3dr8:B
10 2ge3:A 164 133 0.1778 0.1951 0.2406 8.04e-04 2ge3:B, 2ge3:C
11 4zbg:A 154 125 0.2000 0.2338 0.2880 0.002
12 2bei:A 156 123 0.2056 0.2372 0.3008 0.003 2q4v:A
13 6ao7:A 153 55 0.1000 0.1176 0.3273 0.028
14 2cnm:A 151 58 0.1000 0.1192 0.3103 0.037 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
15 3qb8:A 197 66 0.1111 0.1015 0.3030 0.042 3qb8:B
16 6e1x:C 176 81 0.1333 0.1364 0.2963 0.073 5cnp:B, 5cnp:D, 5cnp:F, 6cx8:A, 6cx8:B, 6cx8:C, 6cx8:D, 6cx8:E, 6cx8:F, 6e1x:A, 6e1x:B, 6e1x:D, 4mhd:A, 4mhd:B, 4mhd:C, 4mi4:A, 4mi4:B, 4mi4:C, 4ncz:A, 4ncz:C, 4ncz:B, 4r57:A, 4r57:B, 4r57:C, 4r57:D, 4r57:E, 4r57:F, 4r57:G, 4r57:H, 4r57:I, 4r57:J, 4r57:K, 4r57:L, 4r87:A, 4r87:B, 4r87:C, 4r87:D, 4r87:E, 4r87:F, 4r87:G, 4r87:H, 4r87:I, 4r87:J, 4r87:K, 4r87:L, 5ug4:A, 5ug4:B, 5ug4:C, 4ygo:A, 4ygo:C, 4ygo:D, 4ygo:E
17 1i1d:D 161 61 0.1056 0.1180 0.3115 0.43 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
18 1wwz:A 157 52 0.1000 0.1146 0.3462 0.70 1wwz:B
19 2z1u:A 335 160 0.2222 0.1194 0.2500 1.6
20 7a23:C 693 49 0.0722 0.0188 0.2653 1.7 7a24:C, 7aqr:G, 7ar7:G, 7ar8:G, 7arb:G, 8bed:G, 8bpx:G, 8bq5:G, 8bq6:G
21 4v8p:AA 91 25 0.0667 0.1319 0.4800 1.8 4v8p:DA, 4v8p:FA, 4v8p:HA
22 7zkt:B 202 78 0.1167 0.1040 0.2692 2.4 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
23 8uhe:K 593 37 0.0889 0.0270 0.4324 2.7
24 6nbe:N 186 69 0.1222 0.1183 0.3188 3.2 6nas:N, 6nbw:N
25 2jie:A 445 56 0.0778 0.0315 0.2500 4.4 2o9r:A, 2o9t:A, 2z1s:A
26 4evy:A 147 60 0.0889 0.1088 0.2667 5.7 4evy:B
27 6wqc:A 293 52 0.0833 0.0512 0.2885 6.3 6wqb:A
28 4my0:C 392 23 0.0500 0.0230 0.3913 6.8 4my0:A, 4my0:E, 4my0:B, 4my0:D, 4my0:F
29 4nre:A 675 108 0.1389 0.0370 0.2315 7.1 7laf:A, 7laf:B
30 7mfm:G 1483 62 0.0889 0.0108 0.2581 8.0 7mfm:H, 7mft:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218