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BioLiP
>protein
HMPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLER

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6l1p:C 70 68 1.0000 0.9714 1.0000 1.35e-46 6l1f:B, 6l1p:B, 6l1p:A, 6l1p:D
2 2rhu:A 325 60 0.2647 0.0554 0.3000 1.30e-05 6byb:A, 3oq5:A, 3oq5:C, 3p8h:A, 3p8h:B, 2pqw:A, 2rhi:A, 2rhx:A, 2rhy:A, 2rje:A, 2rje:B, 2rjf:A, 2rjf:C, 3uwn:A
3 2rhu:A 325 60 0.2941 0.0615 0.3333 1.55e-04 6byb:A, 3oq5:A, 3oq5:C, 3p8h:A, 3p8h:B, 2pqw:A, 2rhi:A, 2rhx:A, 2rhy:A, 2rje:A, 2rje:B, 2rjf:A, 2rjf:C, 3uwn:A
4 2vyt:B 183 63 0.2647 0.0984 0.2857 1.55e-04
5 2vyt:A 214 63 0.2647 0.0841 0.2857 0.001 4edu:A
6 3ut1:A 313 56 0.2500 0.0543 0.3036 0.001 4fl6:A, 4fl6:B, 4l59:A
7 3ut1:A 313 61 0.2500 0.0543 0.2787 0.019 4fl6:A, 4fl6:B, 4l59:A
8 3ut1:A 313 64 0.2353 0.0511 0.2500 6.9 4fl6:A, 4fl6:B, 4l59:A
9 4c5i:A 423 60 0.2353 0.0378 0.2667 0.005
10 3f70:A 392 62 0.2206 0.0383 0.2419 0.007
11 6bhd:A 217 63 0.3088 0.0968 0.3333 0.009 6au2:A, 6au3:A, 6bhe:A, 6bhg:A, 6bhh:A, 6bhi:A, 6bpi:A, 7c9n:B, 7c9n:A, 7caj:D, 7caj:A, 7cd9:A, 7cd9:B, 7cjt:D, 7cjt:A, 7cjt:B, 7cjt:C, 8g5e:A, 5kch:A, 5kco:A, 5ke2:A, 5ke3:A, 5kh6:A, 5qt1:A, 5qt2:A, 8uwp:A, 8uwp:B
12 3h6z:A 431 61 0.2647 0.0418 0.2951 0.025 4c5h:A, 3h6z:B
13 3f70:B 410 60 0.2206 0.0366 0.2500 0.036
14 4pl6:A 57 52 0.2353 0.2807 0.3077 0.43 4pl6:B, 4pli:A, 4pli:B, 4pll:A, 4pll:B
15 8bja:B 1638 34 0.1765 0.0073 0.3529 3.8
16 8ewi:A 1775 34 0.1765 0.0068 0.3529 3.8 8ewi:B, 8ewi:C, 8ewi:D
17 8p82:A 1596 34 0.1765 0.0075 0.3529 4.1 8p82:B
18 8d4x:B 1669 34 0.1765 0.0072 0.3529 4.2 8c06:A, 8c06:D
19 8e0q:A 1689 34 0.1765 0.0071 0.3529 4.2 8d4x:A, 8e0q:B
20 7xva:A 226 31 0.1765 0.0531 0.3871 4.5
21 2r58:A 212 58 0.2500 0.0802 0.2931 6.1 2r5a:A, 2r5m:A
22 8c07:B 450 34 0.1765 0.0267 0.3529 6.1
23 2j72:B 103 23 0.1176 0.0777 0.3478 6.4 2j72:A, 2j73:A, 2j73:B
24 6d41:B 579 28 0.1618 0.0190 0.3929 6.7 6d41:A, 6d6w:A, 6d6w:B, 6d6w:C, 6d6w:D, 6d7f:A, 6d7f:B, 6d7f:C, 6d7f:D, 6d7f:E, 6d7f:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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