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BioLiP
>protein
HMNLCYIDGKFLPLEEAKLPVTDLIIQRGVGVFETISTHSRRPLMLTPHLKRLEGSATASSIVMPATLDEMARIIREGIK
KMGCETMVRPYITGGDSFGKDHLFSSSRYFVIFEEIRKPDPILYEKGVALHPINAERYLPSTKSINYMLSFTGQRDSKGA
YEILYCPEGEIVEGSHSTFFLIKNGHLITAPTSRALSGTTRQIVLELARRGNIQVEERCPLLTELPEAEEAFITGTVKEL
LPVVRIGDQIIGNGVPGKLTKHLHQVYLSSIVEWLE

The query sequence (length=276) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8onj:A 277 276 0.9964 0.9928 0.9964 0.0 8ahr:A, 8ahr:B, 8aie:A, 8aie:B, 8ayj:A, 8ayj:B, 8ayk:A, 8ayk:B, 8onj:B, 8onl:A, 8onl:B, 8onm:A, 8onm:B, 8onn:A, 8onn:B, 8onn:C, 8onn:D
2 5mr0:D 290 277 0.3406 0.3241 0.3394 1.47e-36 5mr0:A, 5mr0:B, 5mr0:C, 5mr0:E, 5mr0:F
3 5e25:A 290 275 0.3333 0.3172 0.3345 8.33e-36 5cm0:A, 5cm0:B, 5cm0:C, 5e25:B, 5e25:C
4 8ahu:A 283 286 0.3261 0.3180 0.3147 4.47e-33 7p7x:A, 8raf:A, 8rai:A, 8yrt:A, 8yru:A, 8yrv:A
5 3csw:C 275 276 0.3007 0.3018 0.3007 8.09e-24 3csw:A
6 1a0g:B 282 266 0.2826 0.2766 0.2932 6.18e-22 1a0g:A, 1daa:A, 1daa:B, 2daa:A, 2daa:B, 2dab:A, 2dab:B, 3daa:A, 3daa:B, 4daa:A, 4daa:B, 5daa:A, 5daa:B, 1g2w:A, 1g2w:B, 3lqs:A, 3lqs:B
7 4whx:A 306 289 0.2826 0.2549 0.2699 1.09e-20 4whx:C, 4whx:D, 4whx:E
8 2ej0:B 305 288 0.2862 0.2590 0.2743 2.76e-20 2eiy:A, 2eiy:B, 2eiy:C, 2ej0:A, 2ej0:C, 2ej0:D, 2ej0:E, 2ej0:F, 2ej2:A, 2ej2:B, 2ej2:C, 2ej2:D, 2ej2:E, 2ej2:F, 2ej3:A, 2ej3:B, 2ej3:C, 1wrv:A, 1wrv:B, 1wrv:C
9 7nea:A 309 290 0.2935 0.2621 0.2793 5.70e-19 6gkr:A, 6gkr:B, 6gkr:C, 7neb:A, 6q8e:A
10 1i1l:A 304 284 0.2754 0.2500 0.2676 1.18e-18 1a3g:A, 1a3g:B, 1a3g:C, 1i1k:A, 1i1k:B, 1i1k:C, 1i1l:B, 1i1l:C, 1i1m:A, 1i1m:B, 1i1m:C, 1iyd:A, 1iyd:B, 1iyd:C, 1iye:A, 1iye:B, 1iye:C
11 4cmd:A 322 281 0.2572 0.2205 0.2527 5.63e-17 4cmd:B, 4cmf:A
12 7p3t:B 299 280 0.2645 0.2441 0.2607 4.06e-16 7p3t:A, 7p3t:C, 7p3t:D, 7p3t:E, 7p3t:F
13 6fte:B 321 282 0.2645 0.2274 0.2589 5.47e-16
14 6thq:B 301 280 0.2609 0.2392 0.2571 1.25e-15 5ce8:A, 5ce8:B, 5ce8:C, 6thq:A, 6thq:C
15 9j0u:A 286 224 0.2283 0.2203 0.2812 5.56e-15 9j0v:A
16 7z79:B 306 288 0.2645 0.2386 0.2535 9.46e-15 7z79:A, 7z79:C, 7z79:D, 7z79:E, 7z79:F
17 4chi:A 320 280 0.2319 0.2000 0.2286 1.93e-14 4chi:B, 4uug:A, 4uug:B
18 6snl:D 320 286 0.2464 0.2125 0.2378 5.76e-14 6snl:A, 6snl:B, 6snl:C, 6snl:E, 6snl:F
19 6xwb:A 319 279 0.2138 0.1850 0.2115 4.51e-13 6xwb:B
20 7dbe:B 332 287 0.2536 0.2108 0.2439 4.41e-12 7dbe:A, 7dbe:C, 7dbe:D, 7wud:B, 7wud:A, 7wud:C, 7wud:D
21 6h65:C 308 300 0.2754 0.2468 0.2533 9.84e-12 6h65:A, 6h65:B, 6h65:D, 6h65:E, 6h65:F
22 4ce5:A 325 281 0.2319 0.1969 0.2278 1.33e-11 4ce5:B, 8x1f:A, 8x1f:B, 7xg5:A, 7xg5:B, 8xiy:A, 8xiy:B
23 6xu3:C 322 281 0.2391 0.2050 0.2349 1.48e-11 6xu3:A, 6xu3:B, 6xu3:D
24 3wwh:A 329 285 0.2536 0.2128 0.2456 2.82e-09 5fr9:A, 5fr9:B, 5fr9:C, 5fr9:D, 5fr9:E, 5fr9:F, 5fr9:G, 5fr9:H, 5fr9:I, 5fr9:J, 5fr9:K, 5fr9:L, 3wwi:A, 3wwi:B, 3wwi:C, 3wwi:D, 3wwi:E, 3wwi:F, 3wwi:G, 3wwi:H, 3wwi:I, 3wwi:J, 3wwi:K, 3wwi:L, 3wwj:A, 3wwj:B, 3wwj:C, 3wwj:D, 3wwj:E, 3wwj:F, 3wwj:G, 3wwj:H, 3wwj:I, 3wwj:J, 3wwj:K, 3wwj:L
25 8ivp:B 322 288 0.2464 0.2112 0.2361 2.62e-07 8ivp:A, 8ivp:C, 8ivp:D
26 6q1r:B 284 247 0.2029 0.1972 0.2267 3.17e-07 6q1r:A, 6q1r:C, 6q1r:D, 6q1s:A, 6q1s:B, 6q1s:C, 6q1s:D
27 2zgi:D 246 212 0.2174 0.2439 0.2830 1.29e-05 2zgi:A, 2zgi:B, 2zgi:C
28 5k3w:A 298 255 0.2246 0.2081 0.2431 3.77e-05 5k3w:B
29 1i2k:A 269 250 0.2029 0.2082 0.2240 9.85e-05 1et0:A, 1i2l:A
30 2y4r:A 270 283 0.2319 0.2370 0.2261 2.03e-04 2y4r:B
31 8pnw:A 278 207 0.1775 0.1763 0.2367 2.94e-04 8pnx:A, 8pny:A
32 7unr:G 175 77 0.0870 0.1371 0.3117 0.049 8cd1:G, 6spb:G, 6spd:G, 6spf:G, 6spg:G, 7unu:G, 7unv:G, 7unw:G
33 6csm:D 277 86 0.0978 0.0975 0.3140 0.80 6csm:A, 6csm:B, 6csm:C, 7l1e:B
34 5nem:3 220 35 0.0507 0.0636 0.4000 1.2
35 7qep:N0 178 34 0.0435 0.0674 0.3529 1.9
36 5cfc:B 232 26 0.0435 0.0517 0.4615 2.2 5cfd:B
37 2auv:A 85 26 0.0362 0.1176 0.3846 3.4
38 7o0c:A 242 169 0.1449 0.1653 0.2367 5.0 2amy:A, 7o0c:B, 7o1b:A, 7o1b:B, 7o4g:A, 7o4g:B, 7o58:A, 7o58:B, 7o5z:A, 7o5z:B, 2q4r:A
39 3inn:C 284 54 0.0616 0.0599 0.3148 8.3 3inn:A, 3inn:D
40 4usc:A 303 71 0.0725 0.0660 0.2817 8.3 4usc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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