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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKM
EQGLTSFTEDMKSRGMTPGSRLIDYQLIDSEELAAILGCGPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESIYDH
IERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMD

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4u0v:A 243 241 1.0000 0.9506 0.9585 5.43e-166 4u0v:B, 4u0w:A, 4u0w:B, 4u0y:A, 4u0y:B, 4u0y:C, 4u0y:D, 4wwc:B
2 4wwc:A 213 232 0.9048 0.9812 0.9009 5.91e-148
3 4zsi:A 166 152 0.2381 0.3313 0.3618 2.30e-25 4zsi:B, 4zsk:A, 4zsk:B
4 5d4s:B 83 81 0.1429 0.3976 0.4074 1.42e-17 5d4r:A, 5d4r:B, 5d4s:A, 4egy:A, 4egy:B, 4egz:A, 4egz:B, 4h0e:A, 4h0e:B
5 3ddv:B 139 116 0.1558 0.2590 0.3103 8.85e-15 3ddv:D
6 6za0:A 240 183 0.2294 0.2208 0.2896 2.66e-07 6z74:A, 6z74:B, 6z74:C, 6z74:D, 6za0:B, 6za3:A, 6za3:B, 6za7:A, 6za7:B, 6za7:C, 6za7:D, 6zab:A
7 7zla:B 458 72 0.1039 0.0524 0.3333 2.56e-06 7pq9:AAA, 7pq9:BBB, 7pq9:CCC, 7pq9:DDD, 7pq9:EEE, 7pq9:FFF, 7pq9:GGG, 7pq9:HHH, 7pq9:III, 7pq9:JJJ, 7zpa:A, 7zpa:B
8 7zn5:B 435 67 0.0996 0.0529 0.3433 2.16e-05 7zn5:A
9 3by6:C 120 66 0.0909 0.1750 0.3182 3.73e-05 3by6:A
10 7u5q:A 217 62 0.1039 0.1106 0.3871 7.75e-05 7u5q:B
11 4p9u:E 272 61 0.0996 0.0846 0.3770 8.46e-05 4p9u:F, 4p9u:A, 4p9u:B, 4pdk:A, 4pdk:B
12 5dv5:A 267 61 0.0996 0.0861 0.3770 8.72e-05 5dv5:B
13 1h9t:A 232 67 0.0996 0.0991 0.3433 3.54e-04 1h9g:A, 1h9t:B, 1hw2:A, 1hw2:B
14 2di3:A 231 63 0.0823 0.0823 0.3016 5.06e-04 2di3:B
15 6wfq:C 228 66 0.0996 0.1009 0.3485 6.41e-04 6on4:A, 6on4:B, 6wfq:D, 6wg7:C, 6wg7:D, 6wg7:E, 6wg7:G, 6wg7:F, 6wg7:H
16 1eba:A 212 68 0.0952 0.1038 0.3235 0.089 1eba:B, 1ebp:A, 1ebp:B
17 7xp0:A 200 61 0.0866 0.1000 0.3279 0.53 7xp1:A
18 3wgi:A 217 49 0.0649 0.0691 0.3061 2.0 3wgg:A, 3wgg:B, 3wgh:A, 3wgh:B, 3wgi:B, 3wgi:C, 3wgi:D
19 6ynv:e 417 90 0.0866 0.0480 0.2222 2.2 6ynx:e, 6ynx:E, 6yny:e, 6yny:E, 6ynz:e, 6ynz:E, 6ynz:e3, 6ynz:E3
20 7jil:s 81 27 0.0563 0.1605 0.4815 3.2
21 1i3k:A 347 97 0.1082 0.0720 0.2577 3.2 1ek5:A, 1ek6:A, 1ek6:B, 1hzj:A, 1hzj:B, 1i3k:B, 1i3l:A, 1i3l:B, 1i3m:A, 1i3m:B, 1i3n:A, 1i3n:B
22 5o3n:A 488 85 0.0996 0.0471 0.2706 3.3 5o3n:B
23 2f1c:X 252 39 0.0563 0.0516 0.3333 3.6 4ctd:A
24 2iwv:A 277 44 0.0606 0.0505 0.3182 4.5 2iwv:B, 2iwv:C, 2iwv:D, 2iww:A, 2iww:B, 2wvp:A
25 8c00:t 619 56 0.0693 0.0258 0.2857 7.8 8c01:t, 6rbd:k, 7wtr:CC
26 7wtp:CC 661 56 0.0693 0.0242 0.2857 8.0 6eml:t, 6wdr:k, 7wtq:CC
27 8cbj:k 670 56 0.0693 0.0239 0.2857 8.8 6fai:k, 6y7c:t

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218