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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMKYNQYAYVETDFQQQVKELIDINFLPKNYQVWDFGSLLAKLVKNAIAEAKTDAAKNAKLAEFAVSDHQTLADFLKEKP
TEIGTKQFYNVALQLLGYHVHYDYDFADPTGFMQRNALPFLQDISDNQKLISAFYRLLNTRAKNGQILLDVMAGKGYFTQ
FWGQNKFKFFNGKSIPVFDTNKVIREVVYVETDLDTDHDGKSDLIQVTVFRPEETNKGLKVPALYTASPYFGGIIANEKR
NHNVDENLSDSTEWNDPQYVHSPIVKAEKPDGSSRPATEEAVHKSSYPLNEYMLARGFASVFAGAIGTRGSDGVRITGAP
EETESAAAVIEWLHGDRVAYTDRTRTVRTTADWCNGNIGMTGRSYLGTLQIAIATTGVKGLKTVVSEAAISSWYDYYREH
GSVIAPEACQGEDLDLLAETCQSNLWDAGSYLKIKPEYDKMQKQLREKEDRNTGQYSDFWEAGNYRHHADGIKCSWISVH
GLNDWNVKPKNVYKIWQLVKKMPMKHHLFLHQGPHYNMNNLVSIDFTDLMNLWFVHELLGIENNAYNQWPTVMIQDNLQA
DKWHEEPDWSNDLGQEKIYYPTDEGELFQDGNGKAQKSFTDVGGIEFKKAGISESDWQYKFICGDEKWAKPSLRFETDEF
THPTTIVGRPEVKVRVSASLPKGEISVALVELGERQRLTATPKFLMHGGQELGYRFGTDTLQEFVPDKKTKAKLITKAHM
NLQNFKDMKKPEAIDADKFYDLDFLLQPTYYTIPSGSKLALIIYSTDQGMTKRPLEDETYTIDLANTEIKFYEK

The query sequence (length=794) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6nff:A 794 794 1.0000 1.0000 1.0000 0.0
2 3i2g:A 574 63 0.0327 0.0453 0.4127 6.50e-05 7f65:A, 3i2f:A, 3i2h:A, 3i2i:A, 3i2k:A, 3ida:A, 1ju3:A
3 4bmk:A 398 94 0.0277 0.0553 0.2340 3.1 4bmk:B, 2jg2:A, 2w8j:A, 2w8t:A, 2w8u:A, 2w8v:A, 2w8w:A, 2xbn:A
4 1mpx:A 614 155 0.0479 0.0619 0.2452 4.1 1mpx:B, 1mpx:C, 1mpx:D
5 2fre:A 200 83 0.0302 0.1200 0.2892 5.3 2fre:B
6 6m13:b 688 124 0.0390 0.0451 0.2500 5.5 7dsy:a, 7dsy:b, 7dts:a, 7dts:b, 7elw:a, 7elw:b, 6m11:a, 6m11:b, 6m12:a, 6m12:b, 6m13:a, 4o1o:A, 4o1o:B, 4o1o:C, 4o1o:D, 4o1p:A, 4o1p:B, 4o1p:C, 4o1p:D
7 6f37:A 113 66 0.0277 0.1947 0.3333 6.8 5ajb:A, 5ajb:B, 5ajb:C, 5ajc:A, 5ajc:B, 5ajc:C, 7alf:A, 7alf:B, 7alg:A, 7alg:B, 2bs5:A, 2bs6:A, 2bs6:B, 2bs6:C, 8c9y:A, 8c9z:A, 8cf6:A, 8cf6:C, 8cf6:B, 8cf7:A, 8cf7:B, 8cf7:C, 8cf7:D, 8cf7:E, 8cf7:F, 6f37:B, 6f7w:A, 6f7w:B, 6f7w:C, 6f7x:A, 6f7x:C, 6f7x:B, 6gl5:A, 6gl5:B, 6gl5:C, 4i6s:A, 4i6s:B, 4i6s:C, 5o7u:A, 5o7u:B, 5o7w:A, 5o7w:B, 7p2h:A, 7p2h:B, 7p2i:A, 7p2i:C, 7p2i:B, 7p2j:A, 7p2j:B, 7pr5:A, 7pr5:C, 7pr5:F, 7pr5:B, 7pr5:D, 7pr5:E, 7pr5:G, 7pr5:I, 7pr5:H, 7pr5:J, 7pr5:L, 7pr5:K, 8q6a:A, 8q6b:A, 8q6c:A, 6s99:A, 6s99:C, 6s99:B, 6s99:D, 6s99:F, 6s99:E, 6sth:A, 6sth:B, 6t99:A, 6t99:B, 6t99:C, 6t99:D, 6t99:E, 6t99:F, 6t99:G, 6t99:H, 6t99:I, 6t9a:A, 6t9a:B, 6t9a:C, 6t9b:A, 6t9b:B, 6t9b:C, 6t9b:D, 6t9b:E, 6t9b:F, 6t9b:G, 6t9b:H, 6t9b:I, 6y0x:B, 6y0x:F, 6y0x:C, 6y0x:D, 6y0x:E, 6y0x:A, 6z5g:A, 6z5m:A, 6z5p:A, 6z5p:B, 6z5q:A, 6z5q:B, 6z5w:A, 6z5x:A, 6z5z:A, 6z60:A, 6z62:A, 6zuk:A, 6zuk:B, 6zuk:C, 6zul:A, 6zul:B, 6zul:C, 6zul:D, 6zul:E, 6zul:F, 6zum:A
8 5j04:A 424 37 0.0164 0.0307 0.3514 7.0 5j04:B, 4rop:A
9 2b4k:A 617 102 0.0353 0.0454 0.2745 7.7 2b4k:B, 2b4k:D, 1nx9:A, 1nx9:B, 1nx9:C, 1nx9:D
10 5eqv:A 336 27 0.0164 0.0387 0.4815 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218