Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEH
LQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAILLESALGKSVPIHSLRVGG
VPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKAAEFLVGKDPGMYSFEEVIFG

The query sequence (length=215) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1vm6:B 218 214 0.9953 0.9817 1.0000 1.09e-155 1vm6:A, 1vm6:C, 1vm6:D
2 4ywj:A 268 263 0.4000 0.3209 0.3270 3.52e-42 4ywj:B
3 5tej:A 269 263 0.3814 0.3048 0.3118 4.76e-41 5tej:B, 5tej:C, 5tej:D, 5tem:C, 5tem:A, 5ten:A, 5ten:B, 5ten:C, 5ten:D, 5ten:E, 5ten:F, 5ten:G, 5ten:H, 5us6:A, 5us6:B, 5us6:C, 5us6:E, 5us6:F, 5us6:G, 5us6:I, 5us6:J, 5us6:K
4 1dih:A 272 264 0.3907 0.3088 0.3182 3.21e-38 1arz:A, 1arz:B, 1arz:C, 1arz:D, 1dru:A, 1drv:A, 1drw:A
5 3ijp:B 267 263 0.3535 0.2846 0.2890 6.56e-28 3ijp:A
6 5wol:A 230 227 0.3163 0.2957 0.2996 2.47e-24
7 5eer:A 247 226 0.3256 0.2834 0.3097 7.74e-23 5ees:A
8 5z2e:A 265 244 0.3302 0.2679 0.2910 2.37e-19 5z2f:A
9 1yl5:A 247 237 0.2930 0.2551 0.2658 2.38e-17 1c3v:A, 1c3v:B, 1p9l:A, 1p9l:B, 5tjy:A, 5tjz:A, 5ugv:A, 5ugv:B, 1yl5:B, 1yl6:A, 1yl6:B, 1yl7:A, 1yl7:B, 1yl7:C, 1yl7:D, 1yl7:E, 1yl7:F, 1yl7:G, 1yl7:H
10 5u5n:A 279 186 0.1860 0.1434 0.2151 0.004 5u5i:A, 5u5i:B, 5u5n:B
11 1vl0:A 281 68 0.1023 0.0783 0.3235 0.34 1vl0:B, 1vl0:C
12 6c48:D 87 58 0.0698 0.1724 0.2586 0.47 6c48:A
13 3p19:A 239 60 0.0977 0.0879 0.3500 0.58 3p19:B, 3p19:C, 3p19:D
14 1lss:A 132 32 0.0651 0.1061 0.4375 0.72 1lss:B, 1lss:C, 1lss:D
15 7opk:A 649 79 0.1023 0.0339 0.2785 2.6
16 2j6c:A 109 33 0.0558 0.1101 0.3636 3.3
17 4rlf:B 519 50 0.0791 0.0328 0.3400 3.5 6m2t:A, 6m2t:B, 6m2t:C, 6m2t:D, 6m2u:A, 6m2u:B, 4rlf:A, 4rlq:A, 4rlq:B, 4rm2:A, 4rm2:B, 4rm3:A, 4rm3:B, 4rmn:A, 4rmn:B, 4zjz:A, 4zjz:B
18 5wvp:A 924 122 0.1442 0.0335 0.2541 4.6
19 5mdn:A 761 103 0.1116 0.0315 0.2330 5.3 5mdn:B
20 2ggs:A 273 81 0.1070 0.0842 0.2840 5.5 2ggs:B
21 8jus:A 335 23 0.0558 0.0358 0.5217 5.8 8jus:B
22 8vxb:A 284 39 0.0744 0.0563 0.4103 6.6
23 6uzi:C 470 33 0.0558 0.0255 0.3636 6.7 6uzi:A, 6uzi:B, 6uzi:D
24 7tom:A 498 42 0.0651 0.0281 0.3333 7.0 7tol:A
25 6uiw:A 294 89 0.1116 0.0816 0.2697 7.4 6uiw:B, 6uiw:C, 6uiw:D, 6uiw:E, 6uiw:F, 6uiw:G, 6uiw:H, 6uiw:I, 6uiw:J, 6uiw:K
26 8ctr:A 298 59 0.0791 0.0570 0.2881 9.7 8ctr:B, 8ctr:C, 8ctr:D
27 5hvq:C 236 27 0.0605 0.0551 0.4815 9.8 5wy5:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218